Result of FASTA (omim) for
pF1KB8851
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8851, 73 aa
1>>>pF1KB8851 73 - 73 aa - 73 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7955+/-0.000235; mu= 6.7961+/- 0.015
mean_var=88.8522+/-17.669, 0's: 0 Z-trim(123.5): 31 B-trim: 84 in 1/54
Lambda= 0.136063
statistics sampled from 43311 (43342) to 43311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.508), width: 16
Scan time: 4.200
The best scores are: opt bits E(85289)
NP_004117 (OMIM: 604390) guanine nucleotide-bindin ( 73) 481 102.4 6.8e-23
NP_001316355 (OMIM: 189970) guanine nucleotide-bin ( 74) 380 82.6 6.4e-17
NP_068774 (OMIM: 189970) guanine nucleotide-bindin ( 74) 380 82.6 6.4e-17
NP_001185685 (OMIM: 139391) guanine nucleotide-bin ( 69) 299 66.6 3.7e-12
NP_001185684 (OMIM: 139391) guanine nucleotide-bin ( 69) 299 66.6 3.7e-12
NP_113686 (OMIM: 139391) guanine nucleotide-bindin ( 69) 299 66.6 3.7e-12
NP_001185683 (OMIM: 139391) guanine nucleotide-bin ( 69) 299 66.6 3.7e-12
XP_016857299 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 181 43.5 3.6e-05
NP_061329 (OMIM: 615405) guanine nucleotide-bindin ( 72) 181 43.5 3.6e-05
XP_016857300 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 181 43.5 3.6e-05
XP_016857298 (OMIM: 615405) PREDICTED: guanine nuc ( 72) 181 43.5 3.6e-05
XP_016882095 (OMIM: 604430) PREDICTED: guanine nuc ( 68) 172 41.7 0.00012
NP_443079 (OMIM: 604430) guanine nucleotide-bindin ( 68) 172 41.7 0.00012
NP_444292 (OMIM: 606981) guanine nucleotide-bindin ( 71) 146 36.6 0.0042
XP_016876866 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 146 36.6 0.0042
NP_001230703 (OMIM: 606981) guanine nucleotide-bin ( 71) 146 36.6 0.0042
XP_011535148 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 146 36.6 0.0042
NP_001230702 (OMIM: 606981) guanine nucleotide-bin ( 71) 146 36.6 0.0042
XP_016876865 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 146 36.6 0.0042
XP_006720236 (OMIM: 606981) PREDICTED: guanine nuc ( 71) 146 36.6 0.0042
XP_006718563 (OMIM: 608941) PREDICTED: guanine nuc ( 75) 144 36.2 0.0057
NP_036334 (OMIM: 608941) guanine nucleotide-bindin ( 75) 144 36.2 0.0057
NP_001017998 (OMIM: 604389) guanine nucleotide-bin ( 68) 143 36.0 0.0061
NP_001185593 (OMIM: 604389) guanine nucleotide-bin ( 68) 143 36.0 0.0061
>>NP_004117 (OMIM: 604390) guanine nucleotide-binding pr (73 aa)
initn: 481 init1: 481 opt: 481 Z-score: 532.0 bits: 102.4 E(85289): 6.8e-23
Smith-Waterman score: 481; 100.0% identity (100.0% similar) in 73 aa overlap (1-73:1-73)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
10 20 30 40 50 60
70
pF1KB8 KNPFKEKGSCVIS
:::::::::::::
NP_004 KNPFKEKGSCVIS
70
>>NP_001316355 (OMIM: 189970) guanine nucleotide-binding (74 aa)
initn: 378 init1: 350 opt: 380 Z-score: 424.7 bits: 82.6 E(85289): 6.4e-17
Smith-Waterman score: 380; 75.7% identity (93.2% similar) in 74 aa overlap (1-73:1-74)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
::...:::: ::.::::::.::.::: :.:. :::: ::...:.::::::::::::::::
NP_001 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
10 20 30 40 50 60
70
pF1KB8 KNPFKE-KGSCVIS
:::::: ::.::::
NP_001 KNPFKELKGGCVIS
70
>>NP_068774 (OMIM: 189970) guanine nucleotide-binding pr (74 aa)
initn: 378 init1: 350 opt: 380 Z-score: 424.7 bits: 82.6 E(85289): 6.4e-17
Smith-Waterman score: 380; 75.7% identity (93.2% similar) in 74 aa overlap (1-73:1-74)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
::...:::: ::.::::::.::.::: :.:. :::: ::...:.::::::::::::::::
NP_068 MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEVRDYVEERSGEDPLVKGIPED
10 20 30 40 50 60
70
pF1KB8 KNPFKE-KGSCVIS
:::::: ::.::::
NP_068 KNPFKELKGGCVIS
70
>>NP_001185685 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 299 init1: 299 opt: 299 Z-score: 339.2 bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
.:: ::. ::::::::.:::: : .:: ..:::.:.: ..:.::..::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KB8 KNPFKEKGSCVIS
::::::::.:.::
NP_001 KNPFKEKGGCLIS
60
>>NP_001185684 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 299 init1: 299 opt: 299 Z-score: 339.2 bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
.:: ::. ::::::::.:::: : .:: ..:::.:.: ..:.::..::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KB8 KNPFKEKGSCVIS
::::::::.:.::
NP_001 KNPFKEKGGCLIS
60
>>NP_113686 (OMIM: 139391) guanine nucleotide-binding pr (69 aa)
initn: 299 init1: 299 opt: 299 Z-score: 339.2 bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
.:: ::. ::::::::.:::: : .:: ..:::.:.: ..:.::..::::::
NP_113 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KB8 KNPFKEKGSCVIS
::::::::.:.::
NP_113 KNPFKEKGGCLIS
60
>>NP_001185683 (OMIM: 139391) guanine nucleotide-binding (69 aa)
initn: 299 init1: 299 opt: 299 Z-score: 339.2 bits: 66.6 E(85289): 3.7e-12
Smith-Waterman score: 299; 65.7% identity (88.1% similar) in 67 aa overlap (7-73:3-69)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
.:: ::. ::::::::.:::: : .:: ..:::.:.: ..:.::..::::::
NP_001 MAQDLSEKDLLKMEVEQLKKEVKNTRIPISKAGKEIKEYVEAQAGNDPFLKGIPED
10 20 30 40 50
70
pF1KB8 KNPFKEKGSCVIS
::::::::.:.::
NP_001 KNPFKEKGGCLIS
60
>>XP_016857299 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 174 init1: 174 opt: 181 Z-score: 213.8 bits: 43.5 E(85289): 3.6e-05
Smith-Waterman score: 181; 48.1% identity (79.6% similar) in 54 aa overlap (19-72:18-71)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
:.::: :....: .::: : .. .: ::.. :::. ::: .
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
10 20 30 40 50
70
pF1KB8 KNPFKEKGSCVIS
.::::.: .:.:
XP_016 ENPFKDKKTCIIL
60 70
>>NP_061329 (OMIM: 615405) guanine nucleotide-binding pr (72 aa)
initn: 174 init1: 174 opt: 181 Z-score: 213.8 bits: 43.5 E(85289): 3.6e-05
Smith-Waterman score: 181; 48.1% identity (79.6% similar) in 54 aa overlap (19-72:18-71)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
:.::: :....: .::: : .. .: ::.. :::. ::: .
NP_061 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
10 20 30 40 50
70
pF1KB8 KNPFKEKGSCVIS
.::::.: .:.:
NP_061 ENPFKDKKTCIIL
60 70
>>XP_016857300 (OMIM: 615405) PREDICTED: guanine nucleot (72 aa)
initn: 174 init1: 174 opt: 181 Z-score: 213.8 bits: 43.5 E(85289): 3.6e-05
Smith-Waterman score: 181; 48.1% identity (79.6% similar) in 54 aa overlap (19-72:18-71)
10 20 30 40 50 60
pF1KB8 MPALHIEDLPEKEKLKMEVEQLRKEVKLQRQQVSKCSEEIKNYIEERSGEDPLVKGIPED
:.::: :....: .::: : .. .: ::.. :::. ::: .
XP_016 MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPTS
10 20 30 40 50
70
pF1KB8 KNPFKEKGSCVIS
.::::.: .:.:
XP_016 ENPFKDKKTCIIL
60 70
73 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:12:15 2016 done: Sat Nov 5 20:12:16 2016
Total Scan time: 4.200 Total Display time: -0.050
Function used was FASTA [36.3.4 Apr, 2011]