FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8852, 75 aa
  1>>>pF1KB8852 75 - 75 aa - 75 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8888+/-0.000545; mu= 8.8785+/- 0.033
 mean_var=46.3318+/- 9.084, 0's: 0 Z-trim(111.9): 24  B-trim: 506 in 1/50
 Lambda= 0.188423
 statistics sampled from 12719 (12741) to 12719 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.391), width:  16
 Scan time:  1.340

The best scores are:                                      opt bits E(32554)
CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11           (  75)  499 142.1   3e-35
CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14         (  71)  363 105.2 3.8e-24
CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1            (  75)  341 99.2 2.5e-22
CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19         (  70)  290 85.3 3.5e-18
CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19          (  68)  275 81.2 5.8e-17
CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1         (  72)  272 80.4 1.1e-16
CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9          (  68)  218 65.7 2.7e-12
CCDS696.1 GNG5 gene_id:2787|Hs108|chr1             (  68)  210 63.6 1.2e-11


>>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11                (75 aa)
 initn: 499 init1: 499 opt: 499  Z-score: 746.4  bits: 142.1 E(32554): 3e-35
Smith-Waterman score: 499; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               10        20        30        40        50        60

               70     
pF1KB8 SENPFREKKFFCALL
       :::::::::::::::
CCDS80 SENPFREKKFFCALL
               70     

>>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14              (71 aa)
 initn: 358 init1: 351 opt: 363  Z-score: 546.9  bits: 105.2 E(32554): 3.8e-24
Smith-Waterman score: 363; 79.4% identity (95.6% similar) in 68 aa overlap (8-75:4-71)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
              :.: ::.::::.:::::.::.. ::::::::::::.::.::: ::::.::::.
CCDS32     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
                   10        20        30        40        50      

               70     
pF1KB8 SENPFREKKFFCALL
       :::::::::::::.:
CCDS32 SENPFREKKFFCAIL
         60        70 

>>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1                 (75 aa)
 initn: 351 init1: 341 opt: 341  Z-score: 514.2  bits: 99.2 E(32554): 2.5e-22
Smith-Waterman score: 341; 69.3% identity (85.3% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
       ::     ::: ::.:::: :::::.:: . :.:::.:::::..::.::. ::::: :::.
CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

               70     
pF1KB8 SENPFREKKFFCALL
       ::::::::::::..:
CCDS16 SENPFREKKFFCTIL
               70     

>>CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19              (70 aa)
 initn: 290 init1: 290 opt: 290  Z-score: 439.8  bits: 85.3 E(32554): 3.5e-18
Smith-Waterman score: 290; 57.4% identity (92.6% similar) in 68 aa overlap (8-75:3-70)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
              :.  .:..::: :::::.:... :.:::.:::.:...:..:: .:::.::::.
CCDS12      MSNNMAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPA
                    10        20        30        40        50     

               70     
pF1KB8 SENPFREKKFFCALL
       .:::::.:..::.::
CCDS12 AENPFRDKRLFCVLL
          60        70

>>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19               (68 aa)
 initn: 272 init1: 272 opt: 275  Z-score: 418.0  bits: 81.2 E(32554): 5.8e-17
Smith-Waterman score: 275; 60.9% identity (88.4% similar) in 69 aa overlap (7-75:1-68)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
             ...: .:.::::.::::.:::.. ::::::::.:::.::. :: .:::.. ::.
CCDS12       MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPA
                     10        20        30        40        50    

               70     
pF1KB8 SENPFREKKFFCALL
       :::::..::  : .:
CCDS12 SENPFKDKKP-CIIL
           60         

>>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1              (72 aa)
 initn: 267 init1: 267 opt: 272  Z-score: 413.2  bits: 80.4 E(32554): 1.1e-16
Smith-Waterman score: 272; 61.2% identity (83.6% similar) in 67 aa overlap (9-75:7-72)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               :: .:.:::. :.::..:::. :::::::.::::.::. ::  :::.  .::
CCDS30   MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPT
                 10        20        30        40        50        

               70     
pF1KB8 SENPFREKKFFCALL
       :::::..::  : .:
CCDS30 SENPFKDKKT-CIIL
       60         70  

>>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9               (68 aa)
 initn: 226 init1: 193 opt: 218  Z-score: 334.2  bits: 65.7 E(32554): 2.7e-12
Smith-Waterman score: 218; 50.7% identity (78.3% similar) in 69 aa overlap (7-75:1-68)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
             ..:  : .  ...:::::.::.. :::::.:::.:. ::  .::.: :.. ::.
CCDS35       MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPA
                     10        20        30        40        50    

               70     
pF1KB8 SENPFREKKFFCALL
       . ::::: .  ::::
CCDS35 GSNPFREPRS-CALL
           60         

>>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1                  (68 aa)
 initn: 177 init1: 177 opt: 210  Z-score: 322.5  bits: 63.6 E(32554): 1.2e-11
Smith-Waterman score: 210; 46.4% identity (78.3% similar) in 69 aa overlap (7-75:1-68)

               10        20        30        40        50        60
pF1KB8 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
             .... :..  .:.:.::..::.: :.:::.:::::  .:  .: .:::.: : .
CCDS69       MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSS
                     10        20        30        40        50    

               70     
pF1KB8 SENPFREKKFFCALL
       : :::: .:  :..:
CCDS69 STNPFRPQKV-CSFL
           60         




75 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:56:18 2016 done: Sat Nov  5 19:56:18 2016
 Total Scan time:  1.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]