FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8853, 76 aa
  1>>>pF1KB8853 76 - 76 aa - 76 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1943+/-0.000614; mu= 7.5321+/- 0.037
 mean_var=49.7370+/- 9.666, 0's: 0 Z-trim(109.4): 8  B-trim: 9 in 1/49
 Lambda= 0.181859
 statistics sampled from 10836 (10840) to 10836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.731), E-opt: 0.2 (0.333), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(32554)
CCDS6222.1 PKIA gene_id:5569|Hs108|chr8            (  76)  463 128.5 3.9e-31


>>CCDS6222.1 PKIA gene_id:5569|Hs108|chr8                 (76 aa)
 initn: 463 init1: 463 opt: 463  Z-score: 672.5  bits: 128.5 E(32554): 3.9e-31
Smith-Waterman score: 463; 100.0% identity (100.0% similar) in 76 aa overlap (1-76:1-76)

               10        20        30        40        50        60
pF1KB8 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MTDVETTYADFIASGRTGRRNAIHDILVSSASGNSNELALKLAGLDINKTEGEEDAQRSS
               10        20        30        40        50        60

               70      
pF1KB8 TEQSGEAQGEAAKSES
       ::::::::::::::::
CCDS62 TEQSGEAQGEAAKSES
               70      




76 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:07:20 2016 done: Fri Nov  4 16:07:21 2016
 Total Scan time:  1.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]