FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8862, 101 aa
  1>>>pF1KB8862 101 - 101 aa - 101 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7398+/-0.000672; mu= 12.7074+/- 0.041
 mean_var=64.2291+/-12.740, 0's: 0 Z-trim(109.5): 30  B-trim: 0 in 0/54
 Lambda= 0.160033
 statistics sampled from 10893 (10923) to 10893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.336), width:  16
 Scan time:  1.470

The best scores are:                                      opt bits E(32554)
CCDS1039.1 S100A7 gene_id:6278|Hs108|chr1          ( 101)  672 162.9 3.1e-41
CCDS30872.1 S100A7A gene_id:338324|Hs108|chr1      ( 101)  627 152.5 4.1e-38


>>CCDS1039.1 S100A7 gene_id:6278|Hs108|chr1               (101 aa)
 initn: 672 init1: 672 opt: 672  Z-score: 853.9  bits: 162.9 E(32554): 3.1e-41
Smith-Waterman score: 672; 99.0% identity (100.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB8 MSNTQAERSIIGMIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFE
       :::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS10 MSNTQAERSIIGMIDMFHKYTRRDDKIEKPSLLTMMKENFPNFLSACDKKGTNYLADVFE
               10        20        30        40        50        60

               70        80        90       100 
pF1KB8 KKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       :::::::::::::::::::::::::::::::::::::::::
CCDS10 KKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
               70        80        90       100 

>>CCDS30872.1 S100A7A gene_id:338324|Hs108|chr1           (101 aa)
 initn: 627 init1: 627 opt: 627  Z-score: 797.7  bits: 152.5 E(32554): 4.1e-38
Smith-Waterman score: 627; 93.1% identity (96.0% similar) in 101 aa overlap (1-101:1-101)

               10        20        30        40        50        60
pF1KB8 MSNTQAERSIIGMIDMFHKYTRRDDKIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFE
       ::::::::::::::::::::: :: ::.::::::::::::::::::::::: .::: :::
CCDS30 MSNTQAERSIIGMIDMFHKYTGRDGKIEKPSLLTMMKENFPNFLSACDKKGIHYLATVFE
               10        20        30        40        50        60

               70        80        90       100 
pF1KB8 KKDKNEDKKIDFSEFLSLLGDIATDYHKQSHGAAPCSGGSQ
       :::::::::::::::::::::::.:::::::::::::::::
CCDS30 KKDKNEDKKIDFSEFLSLLGDIAADYHKQSHGAAPCSGGSQ
               70        80        90       100 




101 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:12:18 2016 done: Fri Nov  4 16:12:18 2016
 Total Scan time:  1.470 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]