FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8864, 110 aa
  1>>>pF1KB8864 110 - 110 aa - 110 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7080+/-0.000472; mu= 13.6219+/- 0.029
 mean_var=56.6385+/-11.273, 0's: 0 Z-trim(115.9): 13  B-trim: 0 in 0/51
 Lambda= 0.170419
 statistics sampled from 16436 (16449) to 16436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.851), E-opt: 0.2 (0.505), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS7729.1 INS gene_id:3630|Hs108|chr11            ( 110)  765 194.7 9.8e-51
CCDS41598.1 IGF2 gene_id:723961|Hs108|chr11        ( 200)  438 114.4 2.5e-26


>>CCDS7729.1 INS gene_id:3630|Hs108|chr11                 (110 aa)
 initn: 765 init1: 765 opt: 765  Z-score: 1024.3  bits: 194.7 E(32554): 9.8e-51
Smith-Waterman score: 765; 100.0% identity (100.0% similar) in 110 aa overlap (1-110:1-110)

               10        20        30        40        50        60
pF1KB8 MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED
               10        20        30        40        50        60

               70        80        90       100       110
pF1KB8 LQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN
               70        80        90       100       110

>>CCDS41598.1 IGF2 gene_id:723961|Hs108|chr11             (200 aa)
 initn: 463 init1: 436 opt: 438  Z-score: 586.1  bits: 114.4 E(32554): 2.5e-26
Smith-Waterman score: 438; 77.6% identity (89.4% similar) in 85 aa overlap (1-85:1-82)

               10        20        30        40        50        60
pF1KB8 MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB8 LQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN          
       ::.. . :..   . :  : .:...                                   
CCDS41 LQASALSLSS---STSTWPEGLDATARAPPALVVTANIGQAGGSSSRQFRQRALGTSDSP
               70           80        90       100       110       




110 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:56:51 2016 done: Sat Nov  5 19:56:52 2016
 Total Scan time:  1.780 Total Display time: -0.060

Function used was FASTA [36.3.4 Apr, 2011]