FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8865, 113 aa
  1>>>pF1KB8865 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6169+/-0.00052; mu= 14.3037+/- 0.031
 mean_var=57.4961+/-11.491, 0's: 0 Z-trim(113.7): 4  B-trim: 48 in 1/50
 Lambda= 0.169143
 statistics sampled from 14351 (14355) to 14351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.441), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS42048.1 RPS27L gene_id:51065|Hs108|chr15       (  84)  518 133.1 2.6e-32
CCDS1059.1 RPS27 gene_id:6232|Hs108|chr1           (  84)  502 129.2 3.8e-31


>>CCDS42048.1 RPS27L gene_id:51065|Hs108|chr15            (84 aa)
 initn: 518 init1: 518 opt: 518  Z-score: 693.7  bits: 133.1 E(32554): 2.6e-32
Smith-Waterman score: 518; 98.7% identity (98.7% similar) in 77 aa overlap (19-95:3-79)

               10        20        30        40        50        60
pF1KB8 MCQRCGLKLIVIICFFVQLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKIT
                         ::::::::::::::::::::::::::::::::::::::::::
CCDS42                 MPLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKIT
                               10        20        30        40    

               70        80        90       100       110   
pF1KB8 TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGISFGILQPSDEIDDYKCLYLH
       :::::::::::::::::::::::::::::::: ::                  
CCDS42 TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH             
           50        60        70        80                 

>>CCDS1059.1 RPS27 gene_id:6232|Hs108|chr1                (84 aa)
 initn: 502 init1: 502 opt: 502  Z-score: 672.6  bits: 129.2 E(32554): 3.8e-31
Smith-Waterman score: 502; 94.8% identity (97.4% similar) in 77 aa overlap (19-95:3-79)

               10        20        30        40        50        60
pF1KB8 MCQRCGLKLIVIICFFVQLARDLLHPSLEEEKKKHKKKRLVQSPNSYFMDVKCPGCYKIT
                         ::.:::::: ::::.:::::::::::::::::::::::::::
CCDS10                 MPLAKDLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKIT
                               10        20        30        40    

               70        80        90       100       110   
pF1KB8 TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGISFGILQPSDEIDDYKCLYLH
       :::::::::::::::::::::::::::::::: ::                  
CCDS10 TVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRKQH             
           50        60        70        80                 




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:13:31 2016 done: Fri Nov  4 16:13:32 2016
 Total Scan time:  1.660 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]