FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8866, 115 aa
  1>>>pF1KB8866 115 - 115 aa - 115 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9367+/-0.000304; mu= 12.6102+/- 0.019
 mean_var=61.9456+/-12.296, 0's: 0 Z-trim(117.1): 12  B-trim: 0 in 0/50
 Lambda= 0.162956
 statistics sampled from 28785 (28795) to 28785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.338), width:  16
 Scan time:  4.340

The best scores are:                                      opt bits E(85289)
NP_000306 (OMIM: 146200,168450) parathyroid hormon ( 115)  739 181.4 2.9e-46
NP_001303281 (OMIM: 146200,168450) parathyroid hor ( 147)  739 181.4 3.5e-46


>>NP_000306 (OMIM: 146200,168450) parathyroid hormone is  (115 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 951.6  bits: 181.4 E(85289): 2.9e-46
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KB8 MIPAKDMAKVMIVMLAICFLTKSDGKSVKKRSVSEIQLMHNLGKHLNSMERVEWLRKKLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MIPAKDMAKVMIVMLAICFLTKSDGKSVKKRSVSEIQLMHNLGKHLNSMERVEWLRKKLQ
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KB8 DVHNFVALGAPLAPRDAGSQRPRKKEDNVLVESHEKSLGEADKADVNVLTKAKSQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DVHNFVALGAPLAPRDAGSQRPRKKEDNVLVESHEKSLGEADKADVNVLTKAKSQ
               70        80        90       100       110     

>>NP_001303281 (OMIM: 146200,168450) parathyroid hormone  (147 aa)
 initn: 739 init1: 739 opt: 739  Z-score: 950.1  bits: 181.4 E(85289): 3.5e-46
Smith-Waterman score: 739; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:33-147)

                                             10        20        30
pF1KB8                               MIPAKDMAKVMIVMLAICFLTKSDGKSVKK
                                     ::::::::::::::::::::::::::::::
NP_001 VCMCCFEPIVEIQRIGSDIICNNKRASLVKMIPAKDMAKVMIVMLAICFLTKSDGKSVKK
             10        20        30        40        50        60  

               40        50        60        70        80        90
pF1KB8 RSVSEIQLMHNLGKHLNSMERVEWLRKKLQDVHNFVALGAPLAPRDAGSQRPRKKEDNVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSVSEIQLMHNLGKHLNSMERVEWLRKKLQDVHNFVALGAPLAPRDAGSQRPRKKEDNVL
             70        80        90       100       110       120  

              100       110     
pF1KB8 VESHEKSLGEADKADVNVLTKAKSQ
       :::::::::::::::::::::::::
NP_001 VESHEKSLGEADKADVNVLTKAKSQ
            130       140       




115 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:14:05 2016 done: Fri Nov  4 16:14:05 2016
 Total Scan time:  4.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]