FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8869, 133 aa
  1>>>pF1KB8869 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7218+/-0.000707; mu= 8.6098+/- 0.043
 mean_var=61.1265+/-12.289, 0's: 0 Z-trim(108.3): 10  B-trim: 0 in 0/52
 Lambda= 0.164044
 statistics sampled from 10121 (10127) to 10121 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.311), width:  16
 Scan time:  1.710

The best scores are:                                      opt bits E(32554)
CCDS9325.1 POLR1D gene_id:51082|Hs108|chr13        ( 133)  874 214.8 1.2e-56


>>CCDS9325.1 POLR1D gene_id:51082|Hs108|chr13             (133 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 1130.2  bits: 214.8 E(32554): 1.2e-56
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB8 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
               70        80        90       100       110       120

              130   
pF1KB8 YKDQKASRNESTF
       :::::::::::::
CCDS93 YKDQKASRNESTF
              130   




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:15:48 2016 done: Fri Nov  4 16:15:48 2016
 Total Scan time:  1.710 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]