FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8869, 133 aa
  1>>>pF1KB8869 133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6940+/-0.000332; mu= 8.9350+/- 0.021
 mean_var=65.1813+/-13.002, 0's: 0 Z-trim(115.1): 8  B-trim: 0 in 0/55
 Lambda= 0.158859
 statistics sampled from 25303 (25310) to 25303 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.297), width:  16
 Scan time:  4.950

The best scores are:                                      opt bits E(85289)
NP_057056 (OMIM: 613715,613717) DNA-directed RNA p ( 133)  874 208.6 2.5e-54
XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA- ( 133)  874 208.6 2.5e-54
NP_006225 (OMIM: 604150) DNA-directed RNA polymera ( 117)  214 57.3 7.5e-09
XP_016867842 (OMIM: 604150) PREDICTED: DNA-directe ( 116)  206 55.5 2.7e-08
XP_005250509 (OMIM: 604150) PREDICTED: DNA-directe ( 159)  192 52.3 3.3e-07
NP_116581 (OMIM: 609881) DNA-directed RNA polymera ( 115)  189 51.6 3.9e-07


>>NP_057056 (OMIM: 613715,613717) DNA-directed RNA polym  (133 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 1096.5  bits: 208.6 E(85289): 2.5e-54
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB8 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
               70        80        90       100       110       120

              130   
pF1KB8 YKDQKASRNESTF
       :::::::::::::
NP_057 YKDQKASRNESTF
              130   

>>XP_005266469 (OMIM: 613715,613717) PREDICTED: DNA-dire  (133 aa)
 initn: 874 init1: 874 opt: 874  Z-score: 1096.5  bits: 208.6 E(85289): 2.5e-54
Smith-Waterman score: 874; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133)

               10        20        30        40        50        60
pF1KB8 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
               70        80        90       100       110       120

              130   
pF1KB8 YKDQKASRNESTF
       :::::::::::::
XP_005 YKDQKASRNESTF
              130   

>>NP_006225 (OMIM: 604150) DNA-directed RNA polymerase I  (117 aa)
 initn: 224 init1: 190 opt: 214  Z-score: 279.9  bits: 57.3 E(85289): 7.5e-09
Smith-Waterman score: 214; 32.7% identity (68.3% similar) in 104 aa overlap (20-123:14-114)

               10        20        30        40        50        60
pF1KB8 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
                          :::.: ...  . . .   :. :....::::::: .. ...
NP_006       MNAPPAFESFLLFEGEKKITIN--KDTKVPNACL-FTINKEDHTLGNIIKSQLL
                     10        20          30         40        50 

               70        80        90       100       110       120
pF1KB8 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
       :.:.: : :: . :: : :: .:.::       : :  ....:..  . . ..:...:::
NP_006 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKD
              60        70        80        90       100       110 

              130   
pF1KB8 YKDQKASRNESTF
        ..          
NP_006 KQEGIE       
                    

>>XP_016867842 (OMIM: 604150) PREDICTED: DNA-directed RN  (116 aa)
 initn: 221 init1: 190 opt: 206  Z-score: 270.0  bits: 55.5 E(85289): 2.7e-08
Smith-Waterman score: 206; 32.7% identity (66.3% similar) in 104 aa overlap (20-123:14-113)

               10        20        30        40        50        60
pF1KB8 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
                          :::. :   . . . .   :. :....::::::: .. ...
XP_016       MNAPPAFESFLLFEGEKIT---INKDTKVPNACL-FTINKEDHTLGNIIKSQLL
                     10           20        30         40        50

               70        80        90       100       110       120
pF1KB8 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
       :.:.: : :: . :: : :: .:.::       : :  ....:..  . . ..:...:::
XP_016 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKD
               60        70        80        90       100       110

              130   
pF1KB8 YKDQKASRNESTF
        ..          
XP_016 KQEGIE       
                    

>>XP_005250509 (OMIM: 604150) PREDICTED: DNA-directed RN  (159 aa)
 initn: 198 init1: 164 opt: 192  Z-score: 250.5  bits: 52.3 E(85289): 3.3e-07
Smith-Waterman score: 192; 32.6% identity (66.3% similar) in 95 aa overlap (20-114:14-105)

               10        20        30        40        50        60
pF1KB8 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
                          :::.: ...  . . .   :. :....::::::: .. ...
XP_005       MNAPPAFESFLLFEGEKKITIN--KDTKVPNACL-FTINKEDHTLGNIIKSQLL
                     10        20          30         40        50 

               70        80        90       100       110       120
pF1KB8 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
       :.:.: : :: . :: : :: .:.::       : :  ....:..  . . ..:      
XP_005 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRAGP
              60        70        80        90       100       110 

              130                                      
pF1KB8 YKDQKASRNESTF                                   
                                                       
XP_005 GGADGVGWTLARVPRPGTALACFFGGPGGEAAVMEEQGLPPQAPGHVD
             120       130       140       150         

>>NP_116581 (OMIM: 609881) DNA-directed RNA polymerase I  (115 aa)
 initn: 182 init1: 164 opt: 189  Z-score: 249.0  bits: 51.6 E(85289): 3.9e-07
Smith-Waterman score: 189; 31.3% identity (65.7% similar) in 99 aa overlap (20-118:14-108)

               10        20        30        40        50        60
pF1KB8 MEEDQELERKISGLKTSMAEGERKTALEMVQAAGTDRHCVTFVLHEEDHTLGNSLRYMIM
                          :::. :   . . . . . :. :....::::::: .. ...
NP_116       MNAPPAFESFLLFEGEKIT---INKDTKVPKACL-FTINKEDHTLGNIIKSQLL
                     10           20        30         40        50

               70        80        90       100       110       120
pF1KB8 KNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMNVCQHVLDKFEASIKD
       :.:.: : :: . :: : :: .:.::       : :  ....:..  . . ..:.. .  
NP_116 KDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLP
               60        70        80        90       100       110

              130   
pF1KB8 YKDQKASRNESTF
                    
NP_116 LRLLP        
                    




133 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:15:49 2016 done: Fri Nov  4 16:15:49 2016
 Total Scan time:  4.950 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]