Result of FASTA (ccds) for
pF1KB8871
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8871, 158 aa
1>>>pF1KB8871 158 - 158 aa - 158 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4203+/-0.000642; mu= 11.1499+/- 0.039
mean_var=58.7833+/-11.968, 0's: 0 Z-trim(109.3): 15 B-trim: 0 in 0/50
Lambda= 0.167281
statistics sampled from 10785 (10793) to 10785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.332), width: 16
Scan time: 1.640
The best scores are: opt bits E(32554)
CCDS1437.1 BTG2 gene_id:7832|Hs108|chr1 ( 158) 1062 264.0 2.7e-71
CCDS9043.1 BTG1 gene_id:694|Hs108|chr12 ( 171) 620 157.4 3.8e-39
CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17 ( 345) 352 92.8 2.1e-19
CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22 ( 344) 336 88.9 3e-18
CCDS13569.1 BTG3 gene_id:10950|Hs108|chr21 ( 252) 291 78.0 4.3e-15
CCDS8346.1 BTG4 gene_id:54766|Hs108|chr11 ( 223) 280 75.3 2.4e-14
CCDS46636.1 BTG3 gene_id:10950|Hs108|chr21 ( 296) 281 75.6 2.6e-14
>>CCDS1437.1 BTG2 gene_id:7832|Hs108|chr1 (158 aa)
initn: 1062 init1: 1062 opt: 1062 Z-score: 1393.4 bits: 264.0 E(32554): 2.7e-71
Smith-Waterman score: 1062; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)
10 20 30 40 50 60
pF1KB8 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSIC
70 80 90 100 110 120
130 140 150
pF1KB8 VLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
::::::::::::::::::::::::::::::::::::::
CCDS14 VLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
130 140 150
>>CCDS9043.1 BTG1 gene_id:694|Hs108|chr12 (171 aa)
initn: 693 init1: 611 opt: 620 Z-score: 816.4 bits: 157.4 E(32554): 3.8e-39
Smith-Waterman score: 686; 63.4% identity (86.0% similar) in 164 aa overlap (5-157:7-170)
10 20 30 40 50
pF1KB8 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEK
... :. ::::::.:.:..:::.: .::..:..:: .::: :.:::::::::::
CCDS90 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 PSKGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGS
: ::::::::::::::::.:...:..::::. .: .::::::::::::::::::::::::
CCDS90 PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS
70 80 90 100 110 120
120 130 140 150
pF1KB8 ICVLYEEAPLAASC----------GLLTCKNQVLLGRSSPSKNY-VMAVSS
:::::: .: ..: . ..::...::::.:::::: .:.::
CCDS90 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
130 140 150 160 170
>>CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17 (345 aa)
initn: 331 init1: 331 opt: 352 Z-score: 461.9 bits: 92.8 E(32554): 2.1e-19
Smith-Waterman score: 352; 40.5% identity (75.4% similar) in 126 aa overlap (9-134:1-124)
10 20 30 40 50 60
pF1KB8 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
: :: .:..:. : : .. . ..:...:. :.. : ..:. ::.::::
CCDS11 MQLEIQVALNFIISYLYNK--LPRRRVNIFGEELERLLKKKYEGHWYPEKPY
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSIC
::::.:::.:..:.::.: ..... ::. ... ::..:..:.::.::::.::: : .
CCDS11 KGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVK
60 70 80 90 100 110
130 140 150
pF1KB8 VLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
::: . .: :
CCDS11 VLYVDDNNENGCELDKEIKNSFNPEAQVFMPISDPASSVSSSPSPPFGHSAAVSPTFMPR
120 130 140 150 160 170
>>CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22 (344 aa)
initn: 311 init1: 311 opt: 336 Z-score: 441.0 bits: 88.9 E(32554): 3e-18
Smith-Waterman score: 336; 39.2% identity (73.6% similar) in 125 aa overlap (9-133:1-121)
10 20 30 40 50 60
pF1KB8 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
: :: .:..:. : : .. . ..: .:. :.. : ..:. ::.::::
CCDS14 MQLEIKVALNFIISYLYNK--LPRRRADLFGEELERLLKKKYEGHWYPEKPL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 KGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSIC
::::.::..:.. .::.. .:.. ::. ... .: ::..:.::.::::.::: :..
CCDS14 KGSGFRCVHIGEMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVK
60 70 80 90 100 110
130 140 150
pF1KB8 VLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
::: . . .::
CCDS14 VLYLDD--SEGCGAPELDKEIKSSFNPDAQVFVPIGSQDSSLSNSPSPSFGQSPSPTFIP
120 130 140 150 160
>>CCDS13569.1 BTG3 gene_id:10950|Hs108|chr21 (252 aa)
initn: 255 init1: 255 opt: 291 Z-score: 384.5 bits: 78.0 E(32554): 4.3e-15
Smith-Waterman score: 291; 41.4% identity (69.0% similar) in 116 aa overlap (9-122:1-114)
10 20 30 40 50 60
pF1KB8 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
: ::::.: :.. :.: . .... .. :. : : :.::.::.:::::
CCDS13 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPS
10 20 30 40 50
70 80 90 100 110
pF1KB8 KGSGYRCIRIN--HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGS
::..:::::.: ...:: . .. . . .: ::.:::::::: :: : :: ..
CCDS13 KGQAYRCIRVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCRYGEKNN
60 70 80 90 100 110
120 130 140 150
pF1KB8 ICVLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
..
CCDS13 AFIVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAASP
120 130 140 150 160 170
>>CCDS8346.1 BTG4 gene_id:54766|Hs108|chr11 (223 aa)
initn: 212 init1: 212 opt: 280 Z-score: 371.0 bits: 75.3 E(32554): 2.4e-14
Smith-Waterman score: 280; 42.3% identity (69.4% similar) in 111 aa overlap (9-115:1-107)
10 20 30 40 50 60
pF1KB8 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
: :::..: :.. :.. . .:.:... :. :. : : :. :: . ::
CCDS83 MRDEIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMTILFETYRSHWHSDCPS
10 20 30 40 50
70 80 90 100 110
pF1KB8 KGSGYRCIRINHKM--DPIISR--VASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGED
::...::::::... :::. : : :.. .: : ::.:.:.::::.:: : ::
CCDS83 KGQAFRCIRINNNQNKDPILERACVESNVDFS----HLGLPKEMTIWVDPFEVCCRYGEK
60 70 80 90 100
120 130 140 150
pF1KB8 GSICVLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
CCDS83 NHPFTVASFKGRWEEWELYQQISYAVSRASSDVSSGTSCDEESCSKEPRVIPKVSNPKSI
110 120 130 140 150 160
>>CCDS46636.1 BTG3 gene_id:10950|Hs108|chr21 (296 aa)
initn: 240 init1: 240 opt: 281 Z-score: 370.3 bits: 75.6 E(32554): 2.6e-14
Smith-Waterman score: 281; 43.5% identity (68.7% similar) in 115 aa overlap (9-120:1-111)
10 20 30 40 50 60
pF1KB8 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
: ::::.: :.. :.: . .... .. :. : : :.::.::.:::::
CCDS46 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPS
10 20 30 40 50
70 80 90 100 110
pF1KB8 KGSGYRCIRIN--HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDG-
::..:::::.: ...:: . .. . . .: ::.:::::::: :: : .::
CCDS46 KGQAYRCIRVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCR--RDGV
60 70 80 90 100
120 130 140 150
pF1KB8 SICVLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
: :
CCDS46 SPCWPDCSQTPDLVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDENK
110 120 130 140 150 160
158 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:45:24 2016 done: Sat Nov 5 00:45:24 2016
Total Scan time: 1.640 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]