FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8876, 167 aa
  1>>>pF1KB8876 167 - 167 aa - 167 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6812+/-0.000793; mu= 9.9410+/- 0.048
 mean_var=60.3772+/-12.085, 0's: 0 Z-trim(107.3): 14  B-trim: 0 in 0/51
 Lambda= 0.165058
 statistics sampled from 9493 (9498) to 9493 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.292), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS5800.1 LEP gene_id:3952|Hs108|chr7             ( 167) 1112 272.9 6.5e-74


>>CCDS5800.1 LEP gene_id:3952|Hs108|chr7                  (167 aa)
 initn: 1112 init1: 1112 opt: 1112  Z-score: 1440.5  bits: 272.9 E(32554): 6.5e-74
Smith-Waterman score: 1112; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KB8 MHWGTLCGFLWLWPYLFYVQAVPIQKVQDDTKTLIKTIVTRINDISHTQSVSSKQKVTGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MHWGTLCGFLWLWPYLFYVQAVPIQKVQDDTKTLIKTIVTRINDISHTQSVSSKQKVTGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLP
               70        80        90       100       110       120

              130       140       150       160       
pF1KB8 WASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 WASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC
              130       140       150       160       




167 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:16:49 2016 done: Fri Nov  4 16:16:49 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]