FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8876, 167 aa
  1>>>pF1KB8876 167 - 167 aa - 167 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4296+/-0.000347; mu= 11.5423+/- 0.021
 mean_var=63.5234+/-12.943, 0's: 0 Z-trim(114.4): 17  B-trim: 159 in 1/51
 Lambda= 0.160919
 statistics sampled from 24228 (24245) to 24228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.284), width:  16
 Scan time:  5.070

The best scores are:                                      opt bits E(85289)
NP_000221 (OMIM: 164160,614962) leptin precursor [ ( 167) 1112 266.4 1.5e-71
XP_005250397 (OMIM: 164160,614962) PREDICTED: lept ( 166) 1093 262.0 3.1e-70


>>NP_000221 (OMIM: 164160,614962) leptin precursor [Homo  (167 aa)
 initn: 1112 init1: 1112 opt: 1112  Z-score: 1405.7  bits: 266.4 E(85289): 1.5e-71
Smith-Waterman score: 1112; 100.0% identity (100.0% similar) in 167 aa overlap (1-167:1-167)

               10        20        30        40        50        60
pF1KB8 MHWGTLCGFLWLWPYLFYVQAVPIQKVQDDTKTLIKTIVTRINDISHTQSVSSKQKVTGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MHWGTLCGFLWLWPYLFYVQAVPIQKVQDDTKTLIKTIVTRINDISHTQSVSSKQKVTGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLP
               70        80        90       100       110       120

              130       140       150       160       
pF1KB8 WASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_000 WASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC
              130       140       150       160       

>>XP_005250397 (OMIM: 164160,614962) PREDICTED: leptin i  (166 aa)
 initn: 765 init1: 765 opt: 1093  Z-score: 1381.9  bits: 262.0 E(85289): 3.1e-70
Smith-Waterman score: 1093; 99.4% identity (99.4% similar) in 167 aa overlap (1-167:1-166)

               10        20        30        40        50        60
pF1KB8 MHWGTLCGFLWLWPYLFYVQAVPIQKVQDDTKTLIKTIVTRINDISHTQSVSSKQKVTGL
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_005 MHWGTLCGFLWLWPYLFYVQAVPIQKVQDDTKTLIKTIVTRINDISHT-SVSSKQKVTGL
               10        20        30        40         50         

               70        80        90       100       110       120
pF1KB8 DFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DFIPGLHPILTLSKMDQTLAVYQQILTSMPSRNVIQISNDLENLRDLLHVLAFSKSCHLP
      60        70        80        90       100       110         

              130       140       150       160       
pF1KB8 WASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC
       :::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WASGLETLDSLGGVLEASGYSTEVVALSRLQGSLQDMLWQLDLSPGC
     120       130       140       150       160      




167 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:16:49 2016 done: Fri Nov  4 16:16:50 2016
 Total Scan time:  5.070 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]