FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8878, 169 aa
  1>>>pF1KB8878 169 - 169 aa - 169 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1147+/-0.000736; mu= 2.4505+/- 0.045
 mean_var=184.5254+/-36.165, 0's: 0 Z-trim(116.1): 7  B-trim: 14 in 1/54
 Lambda= 0.094416
 statistics sampled from 16639 (16644) to 16639 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.511), width:  16
 Scan time:  2.300

The best scores are:                                      opt bits E(32554)
CCDS8943.1 DDIT3 gene_id:1649|Hs108|chr12          ( 169) 1090 159.1 1.2e-39
CCDS55838.1 DDIT3 gene_id:1649|Hs108|chr12         ( 192) 1090 159.1 1.3e-39


>>CCDS8943.1 DDIT3 gene_id:1649|Hs108|chr12               (169 aa)
 initn: 1090 init1: 1090 opt: 1090  Z-score: 825.2  bits: 159.1 E(32554): 1.2e-39
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169)

               10        20        30        40        50        60
pF1KB8 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGTYVSPPGNEEEESKIFTTLDPASL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEEDQGRTRKRKQSGHSPARAGKQRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 AWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEEDQGRTRKRKQSGHSPARAGKQRM
               70        80        90       100       110       120

              130       140       150       160         
pF1KB8 KEKEQENERKVAQLAEENERLKQEIERLTREVEATRRALIDRMVNLHQA
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KEKEQENERKVAQLAEENERLKQEIERLTREVEATRRALIDRMVNLHQA
              130       140       150       160         

>>CCDS55838.1 DDIT3 gene_id:1649|Hs108|chr12              (192 aa)
 initn: 1090 init1: 1090 opt: 1090  Z-score: 824.4  bits: 159.1 E(32554): 1.3e-39
Smith-Waterman score: 1090; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:24-192)

                                      10        20        30       
pF1KB8                        MAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
                              :::::::::::::::::::::::::::::::::::::
CCDS55 MELVPATPHYPADVLFQTDPTAEMAAESLPFSFGTLSSWELEAWYEDLQEVLSSDENGGT
               10        20        30        40        50        60

        40        50        60        70        80        90       
pF1KB8 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YVSPPGNEEEESKIFTTLDPASLAWLTEEEPEPAEVTSTSQSPHSPDSSQSSLAQEEEEE
               70        80        90       100       110       120

       100       110       120       130       140       150       
pF1KB8 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DQGRTRKRKQSGHSPARAGKQRMKEKEQENERKVAQLAEENERLKQEIERLTREVEATRR
              130       140       150       160       170       180

       160         
pF1KB8 ALIDRMVNLHQA
       ::::::::::::
CCDS55 ALIDRMVNLHQA
              190  




169 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:57:48 2016 done: Sat Nov  5 19:57:49 2016
 Total Scan time:  2.300 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]