FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8880, 175 aa
  1>>>pF1KB8880 175 - 175 aa - 175 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8707+/-0.000719; mu= 14.4237+/- 0.043
 mean_var=54.5965+/-10.794, 0's: 0 Z-trim(107.5): 26  B-trim: 0 in 0/50
 Lambda= 0.173577
 statistics sampled from 9592 (9616) to 9592 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.295), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS10312.1 BCL2A1 gene_id:597|Hs108|chr15         ( 175) 1179 302.8 6.9e-83
CCDS45322.1 BCL2A1 gene_id:597|Hs108|chr15         ( 163)  935 241.7 1.6e-64


>>CCDS10312.1 BCL2A1 gene_id:597|Hs108|chr15              (175 aa)
 initn: 1179 init1: 1179 opt: 1179  Z-score: 1601.6  bits: 302.8 E(32554): 6.9e-83
Smith-Waterman score: 1179; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KB8 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KB8 FVAEFIMNNTGEWIRQNGGWENGFVKKFEPKSGWMTFLEVTGKICEMLSLLKQYC
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 FVAEFIMNNTGEWIRQNGGWENGFVKKFEPKSGWMTFLEVTGKICEMLSLLKQYC
              130       140       150       160       170     

>>CCDS45322.1 BCL2A1 gene_id:597|Hs108|chr15              (163 aa)
 initn: 935 init1: 935 opt: 935  Z-score: 1271.8  bits: 241.7 E(32554): 1.6e-64
Smith-Waterman score: 935; 100.0% identity (100.0% similar) in 140 aa overlap (1-140:1-140)

               10        20        30        40        50        60
pF1KB8 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MTDCEFGYIYRLAQDYLQCVLQIPQPGSGPSKTSRVLQNVAFSVQKEVEKNLKSCLDNVN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VVSVDTARTLFNQVMEKEFEDGIINWGRIVTIFAFEGILIKKLLRQQIAPDVDTYKEISY
               70        80        90       100       110       120

              130       140       150       160       170     
pF1KB8 FVAEFIMNNTGEWIRQNGGWENGFVKKFEPKSGWMTFLEVTGKICEMLSLLKQYC
       ::::::::::::::::::::                                   
CCDS45 FVAEFIMNNTGEWIRQNGGWGKWHNHTPMLVESVAHKKRKMAL            
              130       140       150       160               




175 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:18:38 2016 done: Fri Nov  4 16:18:38 2016
 Total Scan time:  1.810 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]