FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8886, 193 aa
  1>>>pF1KB8886 193 - 193 aa - 193 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0644+/-0.000374; mu= 14.4550+/- 0.023
 mean_var=69.3476+/-13.628, 0's: 0 Z-trim(113.0): 7  B-trim: 0 in 0/53
 Lambda= 0.154013
 statistics sampled from 22102 (22108) to 22102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.259), width:  16
 Scan time:  5.500

The best scores are:                                      opt bits E(85289)
NP_660287 (OMIM: 607730) DNA damage-inducible tran ( 193) 1280 293.2 1.7e-79
NP_061931 (OMIM: 607729) DNA damage-inducible tran ( 232)  362 89.3 4.9e-18


>>NP_660287 (OMIM: 607730) DNA damage-inducible transcri  (193 aa)
 initn: 1280 init1: 1280 opt: 1280  Z-score: 1548.2  bits: 293.2 E(85289): 1.7e-79
Smith-Waterman score: 1280; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB8 MVATGSLSSKNPASISELLDCGYHPESLLSDFDYWDYVVPEPNLNEVIFEESTCQNLVKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 MVATGSLSSKNPASISELLDCGYHPESLLSDFDYWDYVVPEPNLNEVIFEESTCQNLVKM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 LENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLRLSSTEPCGLRGCVMHVNLEIENVCKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFFFSRGRFSSGFRRTLILSSGFRLVKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 LDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFFFSRGRFSSGFRRTLILSSGFRLVKKK
              130       140       150       160       170       180

              190   
pF1KB8 LYSLIGTTVIEGS
       :::::::::::::
NP_660 LYSLIGTTVIEGS
              190   

>>NP_061931 (OMIM: 607729) DNA damage-inducible transcri  (232 aa)
 initn: 304 init1: 216 opt: 362  Z-score: 444.7  bits: 89.3 E(85289): 4.9e-18
Smith-Waterman score: 362; 35.0% identity (68.9% similar) in 180 aa overlap (6-183:48-223)

                                        10        20        30     
pF1KB8                          MVATGSLSSKNPASISELLDCGYHPESLLSDFDYW
                                     :: :..  :. .  . :. ::    :  : 
NP_061 SSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESL-DSSNSGFGPEE---DTAYL
        20        30        40        50         60           70   

           40        50        60        70        80        90    
pF1KB8 DYV-VPEPNLNEVIFEESTCQNLVKMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLR
       : : .:. .:     .:  : ::...:.. :....  .   ...:.: .:........::
NP_061 DGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMPSQLVSQVGKELLR
            80        90       100       110       120       130   

          100       110       120       130       140       150    
pF1KB8 LSSTEPCGLRGCVMHVNLEIENVCKKLDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFF
       :. .::::::: .. : .:  . :... ... : :.::::.::::.. ..  : ... .:
NP_061 LAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLF
           140       150       160       170       180       190   

           160       170       180       190   
pF1KB8 FSRGR-FSSGFRRTLILSSGFRLVKKKLYSLIGTTVIEGS
        : .  :  :: ..: ::.:::..::::::          
NP_061 SSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC 
           200       210       220       230   




193 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:20:16 2016 done: Fri Nov  4 16:20:16 2016
 Total Scan time:  5.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]