FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8890, 208 aa 1>>>pF1KB8890 208 - 208 aa - 208 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4674+/-0.000823; mu= 11.6460+/- 0.049 mean_var=55.5472+/-11.088, 0's: 0 Z-trim(105.6): 9 B-trim: 6 in 1/49 Lambda= 0.172085 statistics sampled from 8509 (8510) to 8509 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.261), width: 16 Scan time: 2.000 The best scores are: opt bits E(32554) CCDS322.1 MED18 gene_id:54797|Hs108|chr1 ( 208) 1388 352.6 9.9e-98 >>CCDS322.1 MED18 gene_id:54797|Hs108|chr1 (208 aa) initn: 1388 init1: 1388 opt: 1388 Z-score: 1868.0 bits: 352.6 E(32554): 9.9e-98 Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 208 aa overlap (1-208:1-208) 10 20 30 40 50 60 pF1KB8 MEAPPVTMMPVTGGTINMMEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MEAPPVTMMPVTGGTINMMEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 KGQQASPFVLRARRSMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLME :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KGQQASPFVLRARRSMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLME 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 MGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQD 130 140 150 160 170 180 190 200 pF1KB8 MVSDDMKNFAEQLKPLVHLEKIDPKRLM :::::::::::::::::::::::::::: CCDS32 MVSDDMKNFAEQLKPLVHLEKIDPKRLM 190 200 208 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:21:58 2016 done: Fri Nov 4 16:21:58 2016 Total Scan time: 2.000 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]