Result of FASTA (ccds) for
pF1KB8896
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8896, 223 aa
1>>>pF1KB8896 223 - 223 aa - 223 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4624+/-0.000913; mu= 12.3531+/- 0.055
mean_var=58.1078+/-11.599, 0's: 0 Z-trim(104.9): 17 B-trim: 4 in 1/50
Lambda= 0.168251
statistics sampled from 8110 (8124) to 8110 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.25), width: 16
Scan time: 2.100
The best scores are: opt bits E(32554)
CCDS1186.1 APCS gene_id:325|Hs108|chr1 ( 223) 1501 372.6 1.1e-103
CCDS30911.1 CRP gene_id:1401|Hs108|chr1 ( 224) 777 196.9 8.8e-51
CCDS32362.1 PTX4 gene_id:390667|Hs108|chr16 ( 473) 286 77.8 1.3e-14
CCDS5657.1 NPTX2 gene_id:4885|Hs108|chr7 ( 431) 279 76.1 3.9e-14
CCDS33647.1 NPTXR gene_id:23467|Hs108|chr22 ( 500) 267 73.2 3.4e-13
CCDS32762.1 NPTX1 gene_id:4884|Hs108|chr17 ( 432) 263 72.2 5.8e-13
>>CCDS1186.1 APCS gene_id:325|Hs108|chr1 (223 aa)
initn: 1501 init1: 1501 opt: 1501 Z-score: 1975.0 bits: 372.6 E(32554): 1.1e-103
Smith-Waterman score: 1501; 100.0% identity (100.0% similar) in 223 aa overlap (1-223:1-223)
10 20 30 40 50 60
pF1KB8 MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYMWD
130 140 150 160 170 180
190 200 210 220
pF1KB8 SVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV
:::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV
190 200 210 220
>>CCDS30911.1 CRP gene_id:1401|Hs108|chr1 (224 aa)
initn: 769 init1: 582 opt: 777 Z-score: 1025.1 bits: 196.9 E(32554): 8.8e-51
Smith-Waterman score: 777; 51.8% identity (79.5% similar) in 224 aa overlap (1-222:1-223)
10 20 30 40 50 60
pF1KB8 MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLCFRAYS
:.: :: . ::::: .::..::.: :.::::.:: :..:.: .:: :::. ::.:.. :.
CCDS30 MEK-LLCFLVLTSLSHAFGQTDMSRKAFVFPKESDTSYVSLKAPLTKPLKAFTVCLHFYT
10 20 30 40 50
70 80 90 100 110
pF1KB8 DLS--RAYSLFSYNTQGRDNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWE
.:: :.::.::: :. .:::.:.. . ::. .: .. .: : ::::::.:::
CCDS30 ELSSTRGYSIFSYATKRQDNEILIFWSKDIGYSFTVGGSEILFEVPEVTVAPVHICTSWE
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 SSSGIAEFWINGTPLVKKGLRQGYFVEAQPKIVLGQEQDSYGGKFDRSQSFVGEIGDLYM
:.:::.:::..: : :.:.:..:: : :. .:.:::::::.::.:. :::.::.::.. :
CCDS30 SASGIVEFWVDGKPRVRKSLKKGYTVGAEASIILGQEQDSFGGNFEGSQSLVGDIGNVNM
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 WDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLVWV
:: :: :..: . : : :. :.:.:.::.::..: :. :: .:
CCDS30 WDFVLSPDEINTIYLGGPFSPNVLNWRALKYEVQGEVFTKPQLWP
180 190 200 210 220
>>CCDS32362.1 PTX4 gene_id:390667|Hs108|chr16 (473 aa)
initn: 275 init1: 161 opt: 286 Z-score: 375.7 bits: 77.8 E(32554): 1.3e-14
Smith-Waterman score: 295; 32.5% identity (60.2% similar) in 191 aa overlap (25-202:265-448)
10 20 30 40 50
pF1KB8 MNKPLLWISVLTSLLEAFAHTDLSGKVFVFPRESVTDHVNLITP-LEKPLQNFT
: ..::: : : .: ...: . :. ..
CCDS32 GSHRVLSGTAPKDPRQQAWSPQVPGEICGVGPTLVFPNAS-TRNVVFLSPGFVTALRALS
240 250 260 270 280 290
60 70 80 90 100 110
pF1KB8 LCFRAYSDLSRAYSLFSYNTQGRDNELLVYKERVGEYSLYIGR-HKVTSK-VIEKFPAPV
.: . . .: .:.:: :. ::.:... :. :: : : : . .....: .
CCDS32 FCSWVRTASGRLGTLLSYATEDNDNKLVLH----GRDSLLPGSIHFVIGDPAFRELPLQL
300 310 320 330 340
120 130 140 150 160
pF1KB8 -------HICVSWESSSGIAEFWIN-GTPLVKKG--LRQGYFVEAQPKIVLGQEQDSYGG
:::: : :..: ..:.. :: : .:.:: . ..:::::::: ::
CCDS32 LLDGQWHHICVIWTSTQG--RYWLHVDRRLVATGSRFREGYEIPPGGSLVLGQEQDSVGG
350 360 370 380 390 400
170 180 190 200 210 220
pF1KB8 KFDRSQSFVGEIGDLYMWDSVLPPENILSAYQGTPLPANILDWQALNYEIRGYVIIKPLV
:: :..::: .. : .:: .: : .. . : .:.. .
CCDS32 GFDSSEAFVGSMSGLAIWDRALVPGEVANLAIGKEFPTGAILTLANAALAGGFVQGANCT
410 420 430 440 450 460
pF1KB8 WV
CCDS32 CLERCP
470
>>CCDS5657.1 NPTX2 gene_id:4885|Hs108|chr7 (431 aa)
initn: 213 init1: 152 opt: 279 Z-score: 367.2 bits: 76.1 E(32554): 3.9e-14
Smith-Waterman score: 283; 28.8% identity (60.9% similar) in 215 aa overlap (9-213:200-414)
10 20 30
pF1KB8 MNKPLLWISVLTSLLEAFAHTDLSGKVFVFP---RESV
:.:..::. .. . ....: : . :.
CCDS56 ERQLLRKVAELEDEKSLLHNETSAHRQKTESTLNALLQRVTELERGNSAFKSPDAFKVSL
170 180 190 200 210 220
40 50 60 70 80 90
pF1KB8 TDHVN-LITPLEKPLQN---FTLCFRAYSDLSRAYSL-FSYNTQGRDNELLVYKERVGEY
..: : ..: : . ::.:. :. : . . ::: . :. ::... . .
CCDS56 PLRTNYLYGKIKKTLPELYAFTICLWLRSSASPGIGTPFSYAVPGQANEIVLIEWGNNPI
230 240 250 260 270 280
100 110 120 130 140
pF1KB8 SLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPL-VKKGLRQGYFVEAQPK
: :. . . .. . ::::.: . .:. : . .: : . ..: . ..
CCDS56 ELLINDKVAQLPLFVSDGKWHHICVTWTTRDGMWEAFQDGEKLGTGENLAPWHPIKPGGV
290 300 310 320 330 340
150 160 170 180 190 200
pF1KB8 IVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILS-AYQGTPLPANILDWQALN
..::::::. ::.:: .:.::::.... .:: :: ..:.. : .: .:.::. : :
CCDS56 LILGQEQDTVGGRFDATQAFVGELSQFNIWDRVLRAQEIVNIANCSTNMPGNIIPWVDNN
350 360 370 380 390 400
210 220
pF1KB8 YEIRGYVIIKPLVWV
.. :
CCDS56 VDVFGGASKWPVETCEERLLDL
410 420 430
>>CCDS33647.1 NPTXR gene_id:23467|Hs108|chr22 (500 aa)
initn: 159 init1: 159 opt: 267 Z-score: 350.3 bits: 73.2 E(32554): 3.4e-13
Smith-Waterman score: 267; 30.9% identity (61.1% similar) in 162 aa overlap (49-205:316-476)
20 30 40 50 60 70
pF1KB8 AHTDLSGKVFVFPRESVTDHVNLITPLEKPLQNFTLC--FRAYSDLSRAYSLFSYNTQGR
: :: : .:. :. . . :::.. :.
CCDS33 SAYSPPDAFKISIPIRNNYMYARVRKALPELYAFTACMWLRSRSSGTGQGTPFSYSVPGQ
290 300 310 320 330 340
80 90 100 110 120 130
pF1KB8 DNELLVYKERVGEYSLYIGRHKVTSKVIEKFPAPVHICVSWESSSGIAEFWINGTPLVKK
::... . . : :. . . . : . :::..: . .:. . .: : .
CCDS33 ANEIVLLEAGHEPMELLINDKVAQLPLSLKDNGWHHICIAWTTRDGLWSAYQDGE-LQGS
350 360 370 380 390 400
140 150 160 170 180 190
pF1KB8 GLRQGYFVEAQPK--IVLGQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENILSAYQG
: . . .:. ..::::::. ::.:: .:.:::.:... .:: .: : ..:. .
CCDS33 GENLAAWHPIKPHGILILGQEQDTLGGRFDATQAFVGDIAQFNLWDHALTPAQVLGIANC
410 420 430 440 450 460
200 210 220
pF1KB8 T-PLPANILDWQALNYEIRGYVIIKPLVWV
: :: .:.: :.
CCDS33 TAPLLGNVLPWEDKLVEAFGGATKAAFDVCKGRAKA
470 480 490 500
>>CCDS32762.1 NPTX1 gene_id:4884|Hs108|chr17 (432 aa)
initn: 224 init1: 148 opt: 263 Z-score: 346.1 bits: 72.2 E(32554): 5.8e-13
Smith-Waterman score: 263; 29.6% identity (56.8% similar) in 213 aa overlap (13-213:213-418)
10 20 30 40
pF1KB8 MNKPLLWISVLTSLLEAFAHTDLSGKVF--VFPRESVTDHVN
: :: . . : : .:: .. ...
CCDS32 TLEEGKGGPRNDTEERVKIETALTSLHQRISELEKGQKDNRPGDKFQLTFPLRTNYMYAK
190 200 210 220 230 240
50 60 70 80 90
pF1KB8 LITPLEKPLQNFTLCFRAYSDLSRAYSL-FSYNTQGRDNELLVYKERVGEYSLYIGRHKV
. : . . ::.:. :. . . . ::: . :. :::.. . :. . : .
CCDS32 VKKSLPE-MYAFTVCMWLKSSATPGVGTPFSYAVPGQANELVLIEW--GNNPMEI---LI
250 260 270 280 290
100 110 120 130 140 150
pF1KB8 TSKVIEKFPAPV------HICVSWESSSGIAEFWINGTPLVK-KGLRQGYFVEAQPKIVL
..:: :.: . ::::.: . .:. : . .:: . ..: . .. : .::
CCDS32 NDKVA-KLPFVINDGKWHHICVTWTTRDGVWEAYQDGTQGGSGENLAPYHPIKPQGVLVL
300 310 320 330 340 350
160 170 180 190 200 210
pF1KB8 GQEQDSYGGKFDRSQSFVGEIGDLYMWDSVLPPENI--LSAYQGTPLPANILDWQALNYE
:::::. :: :: .:.::::.. . .:: : : .. :.. . : .:.. : . :
CCDS32 GQEQDTLGGGFDATQAFVGELAHFNIWDRKLTPGEVYNLATCSTKALSGNVIAWAESHIE
360 370 380 390 400 410
220
pF1KB8 IRGYVIIKPLVWV
: :
CCDS32 IYGGATKWTFEACRQIN
420 430
223 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:59:32 2016 done: Sat Nov 5 19:59:32 2016
Total Scan time: 2.100 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]