Result of FASTA (ccds) for
pF1KB8901
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8901, 233 aa
1>>>pF1KB8901 233 - 233 aa - 233 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4893+/-0.00085; mu= 13.2360+/- 0.051
mean_var=68.1229+/-13.493, 0's: 0 Z-trim(106.8): 26 B-trim: 0 in 0/50
Lambda= 0.155392
statistics sampled from 9154 (9175) to 9154 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.282), width: 16
Scan time: 2.050
The best scores are: opt bits E(32554)
CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20 ( 233) 1550 356.2 1.1e-98
CCDS13188.1 BCL2L1 gene_id:598|Hs108|chr20 ( 170) 816 191.6 2.8e-49
CCDS11981.1 BCL2 gene_id:596|Hs108|chr18 ( 239) 599 143.0 1.6e-34
CCDS45882.1 BCL2 gene_id:596|Hs108|chr18 ( 205) 551 132.2 2.5e-31
CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14 ( 193) 531 127.7 5.2e-30
CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14 ( 333) 462 112.4 3.8e-25
>>CCDS13189.1 BCL2L1 gene_id:598|Hs108|chr20 (233 aa)
initn: 1550 init1: 1550 opt: 1550 Z-score: 1885.5 bits: 356.2 E(32554): 1.1e-98
Smith-Waterman score: 1550; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233)
10 20 30 40 50 60
pF1KB8 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEP
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 WIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
190 200 210 220 230
>>CCDS13188.1 BCL2L1 gene_id:598|Hs108|chr20 (170 aa)
initn: 1093 init1: 816 opt: 816 Z-score: 998.3 bits: 191.6 E(32554): 2.8e-49
Smith-Waterman score: 971; 73.0% identity (73.0% similar) in 233 aa overlap (1-233:1-170)
10 20 30 40 50 60
pF1KB8 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSQSNRELVVDFLSYKLSQKGYSWSQFSDVEENRTEAPEGTESEMETPSAINGNPSWHLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAY
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEP
:::::
CCDS13 QSFEQ-------------------------------------------------------
190 200 210 220 230
pF1KB8 WIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
:::::::::::::::::::::::::::::::::::::::::::::
CCDS13 --------DTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLFSRK
130 140 150 160 170
>>CCDS11981.1 BCL2 gene_id:596|Hs108|chr18 (239 aa)
initn: 606 init1: 524 opt: 599 Z-score: 733.2 bits: 143.0 E(32554): 1.6e-34
Smith-Waterman score: 599; 51.0% identity (72.0% similar) in 200 aa overlap (5-196:11-203)
10 20 30 40
pF1KB8 MSQSNRELVVDFLSYKLSQKGYSWSQFSDV---EENRTEAPEGTESEM--ETPS
:::.:. .. :::::.:: :. .:: . . :: : : . .::
CCDS11 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDA-GDVGAAPPGAAPAP-GIFSSQPGHTPH
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 -AINGNPSWHLA--DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFS
: . .: . . ..::. ::.. : .: .:. .::.:::.: :::: :.
CCDS11 PAASRDPVARTSPLQTPAAPGAAAGP----ALSPVP-PVVHLTLRQAGDDFSRRYRRDFA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 DLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRI
...::::.:: :: : ::.:::::::::::::::: :::..:::::..::. ::. :
CCDS11 EMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNI
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 AAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLL
: ::. ::: ::. :::.:::::.::::::
CCDS11 ALWMTEYLNRHLHTWIQDNGGWDAFVELYGPSMRPLFDFSWLSLKTLLSLALVGACITLG
180 190 200 210 220 230
>>CCDS45882.1 BCL2 gene_id:596|Hs108|chr18 (205 aa)
initn: 558 init1: 476 opt: 551 Z-score: 676.0 bits: 132.2 E(32554): 2.5e-31
Smith-Waterman score: 551; 49.5% identity (70.8% similar) in 192 aa overlap (5-188:11-195)
10 20 30 40
pF1KB8 MSQSNRELVVDFLSYKLSQKGYSWSQFSDV---EENRTEAPEGTESEM--ETPS
:::.:. .. :::::.:: :. .:: . . :: : : . .::
CCDS45 MAHAGRTGYDNREIVMKYIHYKLSQRGYEWDA-GDVGAAPPGAAPAP-GIFSSQPGHTPH
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 -AINGNPSWHLA--DSPAVNGATGHSSSLDAREVIPMAAVKQALREAGDEFELRYRRAFS
: . .: . . ..::. :: .. : .: .:. .::.:::.: :::: :.
CCDS45 PAASRDPVARTSPLQTPAAPGA----AAGPALSPVP-PVVHLTLRQAGDDFSRRYRRDFA
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 DLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRI
...::::.:: :: : ::.:::::::::::::::: :::..:::::..::. ::. :
CCDS45 EMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVMCVESVNREMSPLVDNI
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 AAWMATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLL
: ::. ::: ::. :::.::::
CCDS45 ALWMTEYLNRHLHTWIQDNGGWVGALGDVSLG
180 190 200
>>CCDS9591.1 BCL2L2 gene_id:599|Hs108|chr14 (193 aa)
initn: 595 init1: 507 opt: 531 Z-score: 652.2 bits: 127.7 E(32554): 5.2e-30
Smith-Waterman score: 531; 51.7% identity (77.5% similar) in 151 aa overlap (82-231:37-185)
60 70 80 90 100 110
pF1KB8 NGNPSWHLADSPAVNGATGHSSSLDAREVIPMA-AVKQALREAGDEFELRYRRAFSDLTS
: : ..::.: :::::: :.::.::::..
CCDS95 APDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAA
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB8 QLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWM
:::.:::.: : : :: .:::. : ::::.:::: ::.:::.:::.:::. ::... ::
CCDS95 QLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWM
70 80 90 100 110 120
180 190 200 210 220 230
pF1KB8 ATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLF
..::. .: ::. .::: :. :::..: :.:. .: . : . ...:.: ::.:
CCDS95 VAYLETQLADWIHSSGGWAEFTALYGDGALEEARRLRE--GNWASVRTVLTGAVALGALV
130 140 150 160 170 180
pF1KB8 SRK
.
CCDS95 TVGAFFASK
190
>>CCDS55906.1 PABPN1 gene_id:100529063|Hs108|chr14 (333 aa)
initn: 526 init1: 460 opt: 462 Z-score: 565.0 bits: 112.4 E(32554): 3.8e-25
Smith-Waterman score: 462; 58.7% identity (82.6% similar) in 109 aa overlap (82-189:37-145)
60 70 80 90 100 110
pF1KB8 NGNPSWHLADSPAVNGATGHSSSLDAREVIPMA-AVKQALREAGDEFELRYRRAFSDLTS
: : ..::.: :::::: :.::.::::..
CCDS55 APDTRALVADFVGYKLRQKGYVCGAGPGEGPAADPLHQAMRAAGDEFETRFRRTFSDLAA
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB8 QLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWM
:::.:::.: : : :: .:::. : ::::.:::: ::.:::.:::.:::. ::... ::
CCDS55 QLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAALCAESVNKEMEPLVGQVQEWM
70 80 90 100 110 120
180 190 200 210 220 230
pF1KB8 ATYLNDHLEPWIQENGGWDTFVELYGNNAAAESRKGQERFNRWFLTGMTVAGVVLLGSLF
..::. .: ::. .:::.
CCDS55 VAYLETQLADWIHSSGGWELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPV
130 140 150 160 170 180
233 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:25:07 2016 done: Fri Nov 4 16:25:07 2016
Total Scan time: 2.050 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]