Result of FASTA (omim) for
pF1KB8904
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8904, 237 aa
1>>>pF1KB8904 237 - 237 aa - 237 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0275+/-0.000299; mu= 3.1774+/- 0.019
mean_var=166.0985+/-33.731, 0's: 0 Z-trim(123.2): 110 B-trim: 2094 in 2/58
Lambda= 0.099516
statistics sampled from 42589 (42708) to 42589 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.501), width: 16
Scan time: 7.360
The best scores are: opt bits E(85289)
NP_068581 (OMIM: 607294) homeobox protein TGIF2 [H ( 237) 1581 237.8 1.2e-62
NP_001186442 (OMIM: 607294) homeobox protein TGIF2 ( 237) 1581 237.8 1.2e-62
NP_001186444 (OMIM: 607294) homeobox protein TGIF2 ( 237) 1581 237.8 1.2e-62
NP_001186443 (OMIM: 607294) homeobox protein TGIF2 ( 237) 1581 237.8 1.2e-62
NP_003235 (OMIM: 142946,602630) homeobox protein T ( 272) 533 87.4 2.7e-17
NP_775300 (OMIM: 142946,602630) homeobox protein T ( 272) 533 87.4 2.7e-17
XP_016881447 (OMIM: 142946,602630) PREDICTED: home ( 272) 533 87.4 2.7e-17
NP_001265613 (OMIM: 142946,602630) homeobox protei ( 272) 533 87.4 2.7e-17
NP_001265611 (OMIM: 142946,602630) homeobox protei ( 275) 533 87.4 2.7e-17
NP_775303 (OMIM: 142946,602630) homeobox protein T ( 252) 532 87.2 2.8e-17
XP_011524037 (OMIM: 142946,602630) PREDICTED: home ( 252) 532 87.2 2.8e-17
NP_775301 (OMIM: 142946,602630) homeobox protein T ( 252) 532 87.2 2.8e-17
NP_775302 (OMIM: 142946,602630) homeobox protein T ( 252) 532 87.2 2.8e-17
XP_016881448 (OMIM: 142946,602630) PREDICTED: home ( 252) 532 87.2 2.8e-17
NP_777480 (OMIM: 142946,602630) homeobox protein T ( 252) 532 87.2 2.8e-17
NP_001265615 (OMIM: 142946,602630) homeobox protei ( 252) 532 87.2 2.8e-17
NP_775299 (OMIM: 142946,602630) homeobox protein T ( 286) 533 87.4 2.8e-17
NP_733796 (OMIM: 142946,602630) homeobox protein T ( 401) 533 87.5 3.6e-17
NP_620410 (OMIM: 300411) homeobox protein TGIF2LX ( 241) 416 70.6 2.8e-12
NP_631960 (OMIM: 400025) homeobox protein TGIF2LY ( 185) 369 63.8 2.4e-10
XP_011541249 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 262 48.6 1.6e-05
XP_016873600 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 262 48.6 1.6e-05
XP_006718957 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 262 48.6 1.6e-05
XP_005271700 (OMIM: 613066) PREDICTED: homeobox pr ( 443) 262 48.6 2e-05
XP_016859632 (OMIM: 601739) PREDICTED: homeobox pr ( 352) 260 48.3 2.1e-05
XP_011541246 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 262 48.7 2.1e-05
NP_071345 (OMIM: 613066) homeobox protein PKNOX2 [ ( 472) 262 48.7 2.1e-05
XP_005271699 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 262 48.7 2.1e-05
XP_016873599 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 262 48.7 2.1e-05
XP_011541247 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 262 48.7 2.1e-05
XP_016859631 (OMIM: 601739) PREDICTED: homeobox pr ( 417) 260 48.3 2.4e-05
XP_016859630 (OMIM: 601739) PREDICTED: homeobox pr ( 433) 260 48.4 2.4e-05
XP_011519893 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 253 47.3 3.9e-05
XP_006720590 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 253 47.3 3.9e-05
XP_016859633 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 252 47.1 4.2e-05
XP_016859634 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 252 47.1 4.2e-05
XP_006720589 (OMIM: 601740) PREDICTED: homeobox pr ( 389) 253 47.3 4.5e-05
XP_005264381 (OMIM: 601739) PREDICTED: homeobox pr ( 400) 252 47.2 5.1e-05
XP_006720586 (OMIM: 601740) PREDICTED: homeobox pr ( 476) 253 47.4 5.3e-05
NP_733775 (OMIM: 601740) homeobox protein Meis2 is ( 477) 253 47.4 5.3e-05
XP_005264379 (OMIM: 601739) PREDICTED: homeobox pr ( 465) 252 47.2 5.7e-05
XP_005264378 (OMIM: 601739) PREDICTED: homeobox pr ( 481) 252 47.2 5.9e-05
NP_001273187 (OMIM: 602100) homeobox protein PKNOX ( 319) 248 46.5 6.3e-05
XP_016859635 (OMIM: 601739) PREDICTED: homeobox pr ( 246) 245 46.0 6.9e-05
NP_001307623 (OMIM: 602100) homeobox protein PKNOX ( 435) 248 46.6 8.1e-05
NP_004562 (OMIM: 602100) homeobox protein PKNOX1 i ( 436) 248 46.6 8.1e-05
XP_005264382 (OMIM: 601739) PREDICTED: homeobox pr ( 325) 245 46.1 8.6e-05
XP_006720592 (OMIM: 601740) PREDICTED: homeobox pr ( 255) 242 45.6 9.6e-05
NP_002389 (OMIM: 601739) homeobox protein Meis1 [H ( 390) 245 46.2 0.0001
XP_005264380 (OMIM: 601739) PREDICTED: homeobox pr ( 406) 245 46.2 0.0001
>>NP_068581 (OMIM: 607294) homeobox protein TGIF2 [Homo (237 aa)
initn: 1581 init1: 1581 opt: 1581 Z-score: 1245.6 bits: 237.8 E(85289): 1.2e-62
Smith-Waterman score: 1581; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
190 200 210 220 230
>>NP_001186442 (OMIM: 607294) homeobox protein TGIF2 [Ho (237 aa)
initn: 1581 init1: 1581 opt: 1581 Z-score: 1245.6 bits: 237.8 E(85289): 1.2e-62
Smith-Waterman score: 1581; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
190 200 210 220 230
>>NP_001186444 (OMIM: 607294) homeobox protein TGIF2 [Ho (237 aa)
initn: 1581 init1: 1581 opt: 1581 Z-score: 1245.6 bits: 237.8 E(85289): 1.2e-62
Smith-Waterman score: 1581; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
190 200 210 220 230
>>NP_001186443 (OMIM: 607294) homeobox protein TGIF2 [Ho (237 aa)
initn: 1581 init1: 1581 opt: 1581 Z-score: 1245.6 bits: 237.8 E(85289): 1.2e-62
Smith-Waterman score: 1581; 100.0% identity (100.0% similar) in 237 aa overlap (1-237:1-237)
10 20 30 40 50 60
pF1KB8 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVALPRGSSPSVLAVSVPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PTNVLSLSVCSMPLHSGQGEKPAAPFPRGELESPKPLVTPGSTLTLLTRAEAGSPTGGLF
130 140 150 160 170 180
190 200 210 220 230
pF1KB8 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTPPPTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
190 200 210 220 230
>>NP_003235 (OMIM: 142946,602630) homeobox protein TGIF1 (272 aa)
initn: 762 init1: 515 opt: 533 Z-score: 431.6 bits: 87.4 E(85289): 2.7e-17
Smith-Waterman score: 661; 49.6% identity (64.7% similar) in 252 aa overlap (3-217:19-269)
10 20 30 40
pF1KB8 MSDS-DLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYN
:: :. : . . .:::.::::::::::.::::::: ::::
NP_003 MKGKKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 AYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDV
:::::::: :: ::.::.::.::::::::::::::::::::::::::::::::.: :..
NP_003 AYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISET
70 80 90 100 110 120
110 120 130 140
pF1KB8 A-----------LPR-----------GSSPSVLAVSVPAPTNVLS-LSVCSMPLHSGQGE
. .: : .:.. : :.. : :. :. :.
NP_003 SSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTA
130 140 150 160 170 180
150 160 170 180
pF1KB8 KPAAPFPR------GELESPKPLVTPGSTLTLLTRAEAGSPTG-------GLFNTPPPTP
.:: :. . . ... . : : : : .: ::::::::::
NP_003 LKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTP
190 200 210 220 230 240
190 200 210 220 230
pF1KB8 PEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:. .. :::.:::::.:::.:::::::: .
NP_003 PDLNQ-DFSGFQLLVDVALKRAAEMELQAKLTA
250 260 270
>>NP_775300 (OMIM: 142946,602630) homeobox protein TGIF1 (272 aa)
initn: 762 init1: 515 opt: 533 Z-score: 431.6 bits: 87.4 E(85289): 2.7e-17
Smith-Waterman score: 661; 49.6% identity (64.7% similar) in 252 aa overlap (3-217:19-269)
10 20 30 40
pF1KB8 MSDS-DLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYN
:: :. : . . .:::.::::::::::.::::::: ::::
NP_775 MKGKKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 AYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDV
:::::::: :: ::.::.::.::::::::::::::::::::::::::::::::.: :..
NP_775 AYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISET
70 80 90 100 110 120
110 120 130 140
pF1KB8 A-----------LPR-----------GSSPSVLAVSVPAPTNVLS-LSVCSMPLHSGQGE
. .: : .:.. : :.. : :. :. :.
NP_775 SSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTA
130 140 150 160 170 180
150 160 170 180
pF1KB8 KPAAPFPR------GELESPKPLVTPGSTLTLLTRAEAGSPTG-------GLFNTPPPTP
.:: :. . . ... . : : : : .: ::::::::::
NP_775 LKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTP
190 200 210 220 230 240
190 200 210 220 230
pF1KB8 PEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:. .. :::.:::::.:::.:::::::: .
NP_775 PDLNQ-DFSGFQLLVDVALKRAAEMELQAKLTA
250 260 270
>>XP_016881447 (OMIM: 142946,602630) PREDICTED: homeobox (272 aa)
initn: 762 init1: 515 opt: 533 Z-score: 431.6 bits: 87.4 E(85289): 2.7e-17
Smith-Waterman score: 661; 49.6% identity (64.7% similar) in 252 aa overlap (3-217:19-269)
10 20 30 40
pF1KB8 MSDS-DLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYN
:: :. : . . .:::.::::::::::.::::::: ::::
XP_016 MKGKKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 AYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDV
:::::::: :: ::.::.::.::::::::::::::::::::::::::::::::.: :..
XP_016 AYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISET
70 80 90 100 110 120
110 120 130 140
pF1KB8 A-----------LPR-----------GSSPSVLAVSVPAPTNVLS-LSVCSMPLHSGQGE
. .: : .:.. : :.. : :. :. :.
XP_016 SSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTA
130 140 150 160 170 180
150 160 170 180
pF1KB8 KPAAPFPR------GELESPKPLVTPGSTLTLLTRAEAGSPTG-------GLFNTPPPTP
.:: :. . . ... . : : : : .: ::::::::::
XP_016 LKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTP
190 200 210 220 230 240
190 200 210 220 230
pF1KB8 PEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:. .. :::.:::::.:::.:::::::: .
XP_016 PDLNQ-DFSGFQLLVDVALKRAAEMELQAKLTA
250 260 270
>>NP_001265613 (OMIM: 142946,602630) homeobox protein TG (272 aa)
initn: 762 init1: 515 opt: 533 Z-score: 431.6 bits: 87.4 E(85289): 2.7e-17
Smith-Waterman score: 661; 49.6% identity (64.7% similar) in 252 aa overlap (3-217:19-269)
10 20 30 40
pF1KB8 MSDS-DLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYN
:: :. : . . .:::.::::::::::.::::::: ::::
NP_001 MKGKKGIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEHRYN
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 AYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDV
:::::::: :: ::.::.::.::::::::::::::::::::::::::::::::.: :..
NP_001 AYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISET
70 80 90 100 110 120
110 120 130 140
pF1KB8 A-----------LPR-----------GSSPSVLAVSVPAPTNVLS-LSVCSMPLHSGQGE
. .: : .:.. : :.. : :. :. :.
NP_001 SSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTA
130 140 150 160 170 180
150 160 170 180
pF1KB8 KPAAPFPR------GELESPKPLVTPGSTLTLLTRAEAGSPTG-------GLFNTPPPTP
.:: :. . . ... . : : : : .: ::::::::::
NP_001 LKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTP
190 200 210 220 230 240
190 200 210 220 230
pF1KB8 PEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:. .. :::.:::::.:::.:::::::: .
NP_001 PDLNQ-DFSGFQLLVDVALKRAAEMELQAKLTA
250 260 270
>>NP_001265611 (OMIM: 142946,602630) homeobox protein TG (275 aa)
initn: 762 init1: 515 opt: 533 Z-score: 431.5 bits: 87.4 E(85289): 2.7e-17
Smith-Waterman score: 661; 49.6% identity (64.7% similar) in 252 aa overlap (3-217:22-272)
10 20 30 40
pF1KB8 MSDS-DLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLH
:: :. : . . .:::.::::::::::.::::::: :
NP_001 MAAAHSGRSIVAASGSETEDEDSMDIPLDLSSSAGSGKRRRRGNLPKESVQILRDWLYEH
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 RYNAYPSEQEKLSLSGQTNLSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKA
::::::::::: :: ::.::.::.::::::::::::::::::::::::::::::::.:
NP_001 RYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKI
70 80 90 100 110 120
110 120 130
pF1KB8 SDVA-----------LPR-----------GSSPSVLAVSVPAPTNVLS-LSVCSMPLHSG
:... .: : .:.. : :.. : :. :. :.
NP_001 SETSSVESVMGIKNFMPALEETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTT
130 140 150 160 170 180
140 150 160 170 180
pF1KB8 QGEKPAAPFPR------GELESPKPLVTPGSTLTLLTRAEAGSPTG-------GLFNTPP
.:: :. . . ... . : : : : .: :::::::
NP_001 VTALKDVPFSLCQSVGVGQNTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPP
190 200 210 220 230 240
190 200 210 220 230
pF1KB8 PTPPEQDKEDFSSFQLLVEVALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
::::. .. :::.:::::.:::.:::::::: .
NP_001 PTPPDLNQ-DFSGFQLLVDVALKRAAEMELQAKLTA
250 260 270
>>NP_775303 (OMIM: 142946,602630) homeobox protein TGIF1 (252 aa)
initn: 762 init1: 515 opt: 532 Z-score: 431.3 bits: 87.2 E(85289): 2.8e-17
Smith-Waterman score: 660; 49.8% identity (64.7% similar) in 249 aa overlap (5-217:6-249)
10 20 30 40 50
pF1KB8 MSDSDLGEDEGLLSLAGKRKRRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTN
::. . : .:::.::::::::::.::::::: :::::::::::: :: ::.
NP_775 MDIPLDLSSSAG----SGKRRRRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTH
10 20 30 40 50
60 70 80 90 100
pF1KB8 LSVLQICNWFINARRRLLPDMLRKDGKDPNQFTISRRGGKASDVA-----------LPR-
::.::.::::::::::::::::::::::::::::::::.: :... .:
NP_775 LSTLQVCNWFINARRRLLPDMLRKDGKDPNQFTISRRGAKISETSSVESVMGIKNFMPAL
60 70 80 90 100 110
110 120 130 140 150
pF1KB8 ----------GSSPSVLAVSVPAPTNVLS-LSVCSMPLHSGQGEKPAAPFPR------GE
: .:.. : :.. : :. :. :. .:: :.
NP_775 EETPFHSCTAGPNPTLGRPLSPKPSSPGSVLARPSVICHTTVTALKDVPFSLCQSVGVGQ
120 130 140 150 160 170
160 170 180 190 200
pF1KB8 LESPKPLVTPGSTLTLLTRAEAGSPTG-------GLFNTPPPTPPEQDKEDFSSFQLLVE
. . ... . : : : : .: :::::::::::. .. :::.:::::.
NP_775 NTDIQQIAAKNFTDTSLMYPEDTCKSGPSTNTQSGLFNTPPPTPPDLNQ-DFSGFQLLVD
180 190 200 210 220 230
210 220 230
pF1KB8 VALQRAAEMELQKQQDPSLPLLHTPIPLVSENPQ
:::.:::::::: .
NP_775 VALKRAAEMELQAKLTA
240 250
237 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:25:39 2016 done: Fri Nov 4 16:25:41 2016
Total Scan time: 7.360 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]