FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8913, 253 aa
  1>>>pF1KB8913 253 - 253 aa - 253 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0687+/-0.000911; mu= 11.1509+/- 0.054
 mean_var=96.1468+/-20.586, 0's: 0 Z-trim(107.9): 54  B-trim: 589 in 1/46
 Lambda= 0.130800
 statistics sampled from 9805 (9842) to 9805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.302), width:  16
 Scan time:  1.920

The best scores are:                                      opt bits E(32554)
CCDS13401.1 TP53RK gene_id:112858|Hs108|chr20      ( 253) 1616 315.0 3.1e-86


>>CCDS13401.1 TP53RK gene_id:112858|Hs108|chr20           (253 aa)
 initn: 1616 init1: 1616 opt: 1616  Z-score: 1661.8  bits: 315.0 E(32554): 3.1e-86
Smith-Waterman score: 1616; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KB8 MAAARATTPADGEEPAPEAEALAAARERSSRFLSGLELVKQGAEARVFRGRFQGRAAVIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAAARATTPADGEEPAPEAEALAAARERSSRFLSGLELVKQGAEARVFRGRFQGRAAVIK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HRFPKGYRHPALEARLGRRRTVQEARALLRCRRAGISAPVVFFVDYASNCLYMEEIEGSV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 TVRDYIQSTMETEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVRDYIQSTMETEKTPQGLSNLAKTIGQVLARMHDEDLIHGDLTTSNMLLKPPLEQLNIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSYSTSSKKARPVLKKLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LIDFGLSFISALPEDKGVDLYVLEKAFLSTHPNTETVFEAFLKSYSTSSKKARPVLKKLD
              190       200       210       220       230       240

              250   
pF1KB8 EVRLRGRKRSMVG
       :::::::::::::
CCDS13 EVRLRGRKRSMVG
              250   




253 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:01:02 2016 done: Sat Nov  5 20:01:03 2016
 Total Scan time:  1.920 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]