Result of FASTA (ccds) for
pF1KB8914
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8914, 255 aa
1>>>pF1KB8914 255 - 255 aa - 255 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6810+/-0.000959; mu= 1.0509+/- 0.059
mean_var=448.1703+/-92.224, 0's: 0 Z-trim(118.9): 102 B-trim: 202 in 1/54
Lambda= 0.060583
statistics sampled from 19927 (20034) to 19927 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.863), E-opt: 0.2 (0.615), width: 16
Scan time: 2.710
The best scores are: opt bits E(32554)
CCDS2269.1 HOXD4 gene_id:3233|Hs108|chr2 ( 255) 1819 171.7 4.3e-43
CCDS8873.1 HOXC4 gene_id:3221|Hs108|chr12 ( 264) 903 91.7 5.5e-19
CCDS11529.1 HOXB4 gene_id:3214|Hs108|chr17 ( 251) 852 87.2 1.2e-17
CCDS5405.1 HOXA4 gene_id:3201|Hs108|chr7 ( 320) 744 77.9 9.4e-15
>>CCDS2269.1 HOXD4 gene_id:3233|Hs108|chr2 (255 aa)
initn: 1819 init1: 1819 opt: 1819 Z-score: 887.2 bits: 171.7 E(32554): 4.3e-43
Smith-Waterman score: 1819; 99.6% identity (99.6% similar) in 255 aa overlap (1-255:1-255)
10 20 30 40 50 60
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQH
190 200 210 220 230 240
250
pF1KB8 LQPMAKDHHTDLTTL
:::::::::::::::
CCDS22 LQPMAKDHHTDLTTL
250
>>CCDS8873.1 HOXC4 gene_id:3221|Hs108|chr12 (264 aa)
initn: 828 init1: 597 opt: 903 Z-score: 454.3 bits: 91.7 E(32554): 5.5e-19
Smith-Waterman score: 903; 54.4% identity (73.5% similar) in 272 aa overlap (1-255:1-264)
10 20 30 40 50
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYG----GGAQG--ADFQPPGLYPR
:.::::...:.:.:::::::::: :..:. :.. .::: .: : .. :: ::
CCDS88 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PDFGEQPFGGSG-PGPGSALPARGHGQEPGGPGGHYAAPGEP-C-PAPPAPPPA-PLPGA
:.. :. .. .. :::.. :::: :. : :. .. : ::: . : : :.
CCDS88 PSYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 RAYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELE
: :: : .: ..: ::: .:::::::.::..:::::.::::::::::::::::::::
CCDS88 PACSQPAPDHPS-SAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------
::::.::::::::::::::.:::::::::::::::::::::::.::::: ::.
CCDS88 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP
180 190 200 210 220 230
230 240 250
pF1KB8 SSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
:. :... ..: :: : ... :.: :
CCDS88 STLSAATPGTSEDHSQSATPPEQQRAEDITRL
240 250 260
>>CCDS11529.1 HOXB4 gene_id:3214|Hs108|chr17 (251 aa)
initn: 963 init1: 599 opt: 852 Z-score: 430.5 bits: 87.2 E(32554): 1.2e-17
Smith-Waterman score: 856; 57.7% identity (71.4% similar) in 248 aa overlap (1-229:1-237)
10 20 30 40 50
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYL-GEQGADYYGGGAQG-ADFQPP-GLYPRPDF
:.:::...::.:::::::::::: :. :: .... ::.:: . ..::: :. :
CCDS11 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GEQPFGGS-GPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPA----PLPGAR-
: ... ::: : : : :: : :::::: : :: :
CCDS11 TVQRYAACRDPGPPPPPPP----PPPPPP-----PPGLS-PRAPAPPPAGALLPEPGQRC
70 80 90 100 110
120 130 140 150 160
pF1KB8 -AYSQSDPKQP---------PPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAY
: :.: : : : .: :.: ::::::.::::..:::::.:::::::::::
CCDS11 EAVSSSPPPPPCAQNPLHPSPSHSACKEP-VVYPWMRKVHVSTVNPNYAGGEPKRSRTAY
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGR
:::::::::::::.:::::::::.::::.::::::::::::::::::::::::::::: :
CCDS11 TRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIR
170 180 190 200 210 220
230 240 250
pF1KB8 SSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
:.....:.
CCDS11 SGGAAGSAGGPPGRPNGGPRAL
230 240 250
>>CCDS5405.1 HOXA4 gene_id:3201|Hs108|chr7 (320 aa)
initn: 835 init1: 633 opt: 744 Z-score: 378.4 bits: 77.9 E(32554): 9.4e-15
Smith-Waterman score: 744; 53.2% identity (66.5% similar) in 248 aa overlap (4-243:71-306)
10 20 30
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQG
.::.. .: .: : :
CCDS54 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAY
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 ADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGG---HYA
: :::. :: :.: ::: ... ::. .: : .: .: : . .
CCDS54 PYGYRGGAS------PGRPPQP---EQP-PAQAKGPAHGLHA-SHVLQPQLPPPLQPRAV
110 120 130 140
100 110 120 130 140
pF1KB8 APGEP--CPAPPAPPPAPLPG-ARAYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNP
:. : : : :: : .: : : : . : : :.: ::::::::.::..:::
CCDS54 PPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEP-VVYPWMKKIHVSAVNP
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB8 NYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRM
.:.:::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS54 SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM
210 220 230 240 250 260
210 220 230 240 250
pF1KB8 KWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQ--HLQPMAKDHHTDLTTL
:::::::::::: :::.:.:.:. . : .: ::.:
CCDS54 KWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI
270 280 290 300 310 320
255 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:28:36 2016 done: Fri Nov 4 16:28:37 2016
Total Scan time: 2.710 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]