Result of FASTA (omim) for
pF1KB8914
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8914, 255 aa
1>>>pF1KB8914 255 - 255 aa - 255 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.4137+/-0.000378; mu= 2.3300+/- 0.024
mean_var=468.3695+/-95.252, 0's: 0 Z-trim(126.7): 129 B-trim: 999 in 1/56
Lambda= 0.059262
statistics sampled from 53029 (53197) to 53029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.866), E-opt: 0.2 (0.624), width: 16
Scan time: 8.680
The best scores are: opt bits E(85289)
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 1819 168.4 1.2e-41
XP_005246571 (OMIM: 142981) PREDICTED: homeobox pr ( 146) 1072 104.1 1.4e-22
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 903 90.1 4.4e-18
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 903 90.1 4.4e-18
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 852 85.7 8.8e-17
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 744 76.6 6.1e-14
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 526 57.9 2.3e-08
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 499 55.4 1e-07
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 481 53.9 2.9e-07
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 481 53.9 2.9e-07
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 481 53.9 2.9e-07
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 481 54.0 3.4e-07
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 459 52.1 1.2e-06
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 445 50.8 2.5e-06
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 393 46.1 4.4e-05
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 396 46.6 4.4e-05
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 397 47.0 5.5e-05
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 393 46.4 5.5e-05
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 380 45.4 0.00013
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 376 44.9 0.00015
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 371 44.9 0.00029
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 371 44.9 0.00029
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 371 44.9 0.00029
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 371 44.9 0.00029
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 371 44.9 0.00029
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 371 44.9 0.00029
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 371 44.9 0.00029
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 371 44.9 0.00029
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 368 44.7 0.00035
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 368 44.7 0.00035
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 368 44.7 0.00035
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 368 44.7 0.00035
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 368 44.7 0.00035
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 368 44.7 0.00035
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 368 44.7 0.00035
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 344 42.3 0.0011
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 347 42.8 0.0011
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 343 42.3 0.0012
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 338 41.8 0.0016
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 338 42.0 0.0018
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 338 42.0 0.0018
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 338 42.1 0.002
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 338 42.1 0.002
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 338 42.1 0.002
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 338 42.1 0.002
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 338 42.1 0.002
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 338 42.1 0.002
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 338 42.1 0.002
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 338 42.2 0.0022
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 338 42.3 0.0024
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 1819 init1: 1819 opt: 1819 Z-score: 869.0 bits: 168.4 E(85289): 1.2e-41
Smith-Waterman score: 1819; 99.6% identity (99.6% similar) in 255 aa overlap (1-255:1-255)
10 20 30 40 50 60
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQH
190 200 210 220 230 240
250
pF1KB8 LQPMAKDHHTDLTTL
:::::::::::::::
NP_055 LQPMAKDHHTDLTTL
250
>>XP_005246571 (OMIM: 142981) PREDICTED: homeobox protei (146 aa)
initn: 1072 init1: 1072 opt: 1072 Z-score: 526.3 bits: 104.1 E(85289): 1.4e-22
Smith-Waterman score: 1072; 99.3% identity (99.3% similar) in 144 aa overlap (1-144:1-144)
10 20 30 40 50 60
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLT
:: :::::::::::::::::::::
XP_005 PPSGTALKQPAVVYPWMKKVHVNSGI
130 140
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 828 init1: 597 opt: 903 Z-score: 445.6 bits: 90.1 E(85289): 4.4e-18
Smith-Waterman score: 903; 54.4% identity (73.5% similar) in 272 aa overlap (1-255:1-264)
10 20 30 40 50
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYG----GGAQG--ADFQPPGLYPR
:.::::...:.:.:::::::::: :..:. :.. .::: .: : .. :: ::
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PDFGEQPFGGSG-PGPGSALPARGHGQEPGGPGGHYAAPGEP-C-PAPPAPPPA-PLPGA
:.. :. .. .. :::.. :::: :. : :. .. : ::: . : : :.
NP_705 PSYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 RAYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELE
: :: : .: ..: ::: .:::::::.::..:::::.::::::::::::::::::::
NP_705 PACSQPAPDHPS-SAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------
::::.::::::::::::::.:::::::::::::::::::::::.::::: ::.
NP_705 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP
180 190 200 210 220 230
230 240 250
pF1KB8 SSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
:. :... ..: :: : ... :.: :
NP_705 STLSAATPGTSEDHSQSATPPEQQRAEDITRL
240 250 260
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 828 init1: 597 opt: 903 Z-score: 445.6 bits: 90.1 E(85289): 4.4e-18
Smith-Waterman score: 903; 54.4% identity (73.5% similar) in 272 aa overlap (1-255:1-264)
10 20 30 40 50
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYG----GGAQG--ADFQPPGLYPR
:.::::...:.:.:::::::::: :..:. :.. .::: .: : .. :: ::
NP_055 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PDFGEQPFGGSG-PGPGSALPARGHGQEPGGPGGHYAAPGEP-C-PAPPAPPPA-PLPGA
:.. :. .. .. :::.. :::: :. : :. .. : ::: . : : :.
NP_055 PSYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 RAYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELE
: :: : .: ..: ::: .:::::::.::..:::::.::::::::::::::::::::
NP_055 PACSQPAPDHPS-SAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE
120 130 140 150 160 170
180 190 200 210 220
pF1KB8 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------
::::.::::::::::::::.:::::::::::::::::::::::.::::: ::.
NP_055 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP
180 190 200 210 220 230
230 240 250
pF1KB8 SSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
:. :... ..: :: : ... :.: :
NP_055 STLSAATPGTSEDHSQSATPPEQQRAEDITRL
240 250 260
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 963 init1: 599 opt: 852 Z-score: 422.3 bits: 85.7 E(85289): 8.8e-17
Smith-Waterman score: 856; 57.7% identity (71.4% similar) in 248 aa overlap (1-229:1-237)
10 20 30 40 50
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYL-GEQGADYYGGGAQG-ADFQPP-GLYPRPDF
:.:::...::.:::::::::::: :. :: .... ::.:: . ..::: :. :
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 GEQPFGGS-GPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPA----PLPGAR-
: ... ::: : : : :: : :::::: : :: :
NP_076 TVQRYAACRDPGPPPPPPP----PPPPPP-----PPGLS-PRAPAPPPAGALLPEPGQRC
70 80 90 100 110
120 130 140 150 160
pF1KB8 -AYSQSDPKQP---------PPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAY
: :.: : : : .: :.: ::::::.::::..:::::.:::::::::::
NP_076 EAVSSSPPPPPCAQNPLHPSPSHSACKEP-VVYPWMRKVHVSTVNPNYAGGEPKRSRTAY
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGR
:::::::::::::.:::::::::.::::.::::::::::::::::::::::::::::: :
NP_076 TRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPNTKIR
170 180 190 200 210 220
230 240 250
pF1KB8 SSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
:.....:.
NP_076 SGGAAGSAGGPPGRPNGGPRAL
230 240 250
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 835 init1: 633 opt: 744 Z-score: 371.3 bits: 76.6 E(85289): 6.1e-14
Smith-Waterman score: 744; 53.2% identity (66.5% similar) in 248 aa overlap (4-243:71-306)
10 20 30
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQG
.::.. .: .: : :
NP_002 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAADTAY
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB8 ADYYGGGAQGADFQPPGLYPRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGG---HYA
: :::. :: :.: ::: ... ::. .: : .: .: : . .
NP_002 PYGYRGGAS------PGRPPQP---EQP-PAQAKGPAHGLHA-SHVLQPQLPPPLQPRAV
110 120 130 140
100 110 120 130 140
pF1KB8 APGEP--CPAPPAPPPAPLPG-ARAYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNP
:. : : : :: : .: : : : . : : :.: ::::::::.::..:::
NP_002 PPAAPRRCEAAPATPGVPAGGSAPACPLLLADKSPLGLKGKEP-VVYPWMKKIHVSAVNP
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB8 NYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRM
.:.:::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_002 SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM
210 220 230 240 250 260
210 220 230 240 250
pF1KB8 KWKKDHKLPNTKGRSSSSSSSSSCSSSVAPSQ--HLQPMAKDHHTDLTTL
:::::::::::: :::.:.:.:. . : .: ::.:
NP_002 KWKKDHKLPNTKMRSSNSASASAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI
270 280 290 300 310 320
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 436 init1: 408 opt: 526 Z-score: 271.3 bits: 57.9 E(85289): 2.3e-08
Smith-Waterman score: 526; 47.1% identity (66.2% similar) in 204 aa overlap (27-215:62-256)
10 20 30 40 50
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGE-QGADYYGGGAQGADFQP----PGL
:..: . : :...:..: .: :.
NP_061 EQFRDSASMHSGRYGYGYNGMDLSVGRSGSGHFGSGERARSYAASASAAPAEPRYSQPAT
40 50 60 70 80 90
60 70 80 90 100
pF1KB8 Y---PRPDFGEQPFGGSGPGPGSALPARGHGQEPGGPGG-------HYAAPGEPCPAPPA
:.:: : .. .:.::: :... .. :. : .. : :
NP_061 STHSPQPD--PLPCSAVAPSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGA
100 110 120 130 140
110 120 130 140 150 160
pF1KB8 PPPAPLPGARAYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAY
:: . .: .::.:. ::. :: . ::::.:.:.. . : : : ::.::::
NP_061 EEDAPASSEQASAQSEPSPAPPA----QPQI-YPWMRKLHIS--HDNIGGPEGKRARTAY
150 160 170 180 190 200
170 180 190 200 210 220
pF1KB8 TRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGR
:: :.:::::::::::::::::::::::.::::::::::::::::::::::.::
NP_061 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSMA
210 220 230 240 250 260
230 240 250
pF1KB8 SSSSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
NP_061 AAGGAFRP
270
>>NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [Homo (222 aa)
initn: 483 init1: 366 opt: 499 Z-score: 259.7 bits: 55.4 E(85289): 1e-07
Smith-Waterman score: 499; 44.9% identity (64.0% similar) in 225 aa overlap (3-215:1-216)
10 20 30 40 50
pF1KB8 MVMSSYMVNSKYVD-PKFPPCEEYLQGGYLGE---QGADY-YGGGAQGADFQPPGLYPRP
::::..:: : . :..: . :.: . :.. : ::: . : ::. :
NP_061 MSSYVANSFYKQSPNIPAYNMQTCGNYGSASEVQASRYCYGGLDLSITFPPPA--PSN
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 DFGEQPFGGSGPGPGSALPARGHGQEPG-GPGGHYAAPGEP-CPAPPAPPPAPLPGARAY
.. .. ..: :: . . :: .:: ::: .: . : :: :..
NP_061 SLHGVDMA-ANPRAHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARPALEERAKSS
60 70 80 90 100 110
120 130 140 150 160
pF1KB8 SQSDPKQPPPG--TALKQPAV---VYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLE
.. .: : ..:.:: . .:::: :.:.. . : : :::::.::: :.::
NP_061 GEIKEEQAQTGQPAGLSQPPAPPQIYPWMTKLHMS----HETDG--KRSRTSYTRYQTLE
120 130 140 150 160
170 180 190 200 210 220
pF1KB8 LEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSS
::::::::::::::::::::..:::.:::::::::::::::::: :.
NP_061 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKMKSKEAL
170 180 190 200 210 220
230 240 250
pF1KB8 SSCSSSVAPSQHLQPMAKDHHTDLTTL
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 440 init1: 371 opt: 481 Z-score: 251.3 bits: 53.9 E(85289): 2.9e-07
Smith-Waterman score: 481; 44.1% identity (57.2% similar) in 222 aa overlap (3-215:1-207)
10 20 30 40 50 60
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
::::.::: :: : ..::. :..: :: : :: : .:
XP_005 MSSYFVNS-----TFPVTLASGQESFLGQL--PLYSSGY--AD--PLRHYPAP-YGPG
10 20 30 40
70 80 90 100 110
pF1KB8 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPG------EPCP---APPAPPPAPLPGAR
: .: . .: : : : ..: . ::. : : :: : :
XP_005 PGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 AYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK
.: : . : . :::::... :: : . : .:.: .::: :.:::::
XP_005 DCAQ-DKSVFGETEEQKCSTPVYPWMQRM--NSCNSSSFGPSGRRGRQTYTRYQTLELEK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSC
:::.::::::::::::::.:::.:::::::::::::::::. ::
XP_005 EFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQA
170 180 190 200 210 220
240 250
pF1KB8 SSSVAPSQHLQPMAKDHHTDLTTL
XP_005 E
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 440 init1: 371 opt: 481 Z-score: 251.3 bits: 53.9 E(85289): 2.9e-07
Smith-Waterman score: 481; 44.1% identity (57.2% similar) in 222 aa overlap (3-215:1-207)
10 20 30 40 50 60
pF1KB8 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYGGGAQGADFQPPGLYPRPDFGEQ
::::.::: :: : ..::. :..: :: : :: : .:
XP_005 MSSYFVNS-----TFPVTLASGQESFLGQL--PLYSSGY--AD--PLRHYPAP-YGPG
10 20 30 40
70 80 90 100 110
pF1KB8 PFGGSGPGPGSALPARGHGQEPGGPGGHYAAPG------EPCP---APPAPPPAPLPGAR
: .: . .: : : : ..: . ::. : : :: : :
XP_005 PGQDKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKESACALSGADEQPPFHPEPRKS
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 AYSQSDPKQPPPGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK
.: : . : . :::::... :: : . : .:.: .::: :.:::::
XP_005 DCAQ-DKSVFGETEEQKCSTPVYPWMQRM--NSCNSSSFGPSGRRGRQTYTRYQTLELEK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSSSC
:::.::::::::::::::.:::.:::::::::::::::::. ::
XP_005 EFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEEEEEKQA
170 180 190 200 210 220
240 250
pF1KB8 SSSVAPSQHLQPMAKDHHTDLTTL
XP_005 E
255 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:28:37 2016 done: Fri Nov 4 16:28:38 2016
Total Scan time: 8.680 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]