FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8920, 267 aa
  1>>>pF1KB8920 267 - 267 aa - 267 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6309+/-0.000677; mu= 10.4631+/- 0.041
 mean_var=121.4339+/-24.097, 0's: 0 Z-trim(114.2): 4  B-trim: 0 in 0/53
 Lambda= 0.116387
 statistics sampled from 14772 (14775) to 14772 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.454), width:  16
 Scan time:  2.750

The best scores are:                                      opt bits E(32554)
CCDS1717.1 POMC gene_id:5443|Hs108|chr2            ( 267) 1873 324.6 4.4e-89


>>CCDS1717.1 POMC gene_id:5443|Hs108|chr2                 (267 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1712.7  bits: 324.6 E(32554): 4.4e-89
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KB8 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
              190       200       210       220       230       240

              250       260       
pF1KB8 MTSEKSQTPLVTLFKNAIIKNAYKKGE
       :::::::::::::::::::::::::::
CCDS17 MTSEKSQTPLVTLFKNAIIKNAYKKGE
              250       260       




267 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:01:44 2016 done: Sat Nov  5 20:01:44 2016
 Total Scan time:  2.750 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]