FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8920, 267 aa
  1>>>pF1KB8920 267 - 267 aa - 267 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8379+/-0.000305; mu= 9.2298+/- 0.019
 mean_var=131.5194+/-25.856, 0's: 0 Z-trim(120.9): 5  B-trim: 0 in 0/56
 Lambda= 0.111835
 statistics sampled from 36802 (36807) to 36802 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.432), width:  16
 Scan time:  6.940

The best scores are:                                      opt bits E(85289)
NP_001306133 (OMIM: 176830,601665,609734) pro-opio ( 267) 1873 312.7 4.5e-85
NP_001306134 (OMIM: 176830,601665,609734) pro-opio ( 267) 1873 312.7 4.5e-85
NP_001030333 (OMIM: 176830,601665,609734) pro-opio ( 267) 1873 312.7 4.5e-85
NP_000930 (OMIM: 176830,601665,609734) pro-opiomel ( 267) 1873 312.7 4.5e-85


>>NP_001306133 (OMIM: 176830,601665,609734) pro-opiomela  (267 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1648.4  bits: 312.7 E(85289): 4.5e-85
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KB8 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
              190       200       210       220       230       240

              250       260       
pF1KB8 MTSEKSQTPLVTLFKNAIIKNAYKKGE
       :::::::::::::::::::::::::::
NP_001 MTSEKSQTPLVTLFKNAIIKNAYKKGE
              250       260       

>>NP_001306134 (OMIM: 176830,601665,609734) pro-opiomela  (267 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1648.4  bits: 312.7 E(85289): 4.5e-85
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KB8 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
              190       200       210       220       230       240

              250       260       
pF1KB8 MTSEKSQTPLVTLFKNAIIKNAYKKGE
       :::::::::::::::::::::::::::
NP_001 MTSEKSQTPLVTLFKNAIIKNAYKKGE
              250       260       

>>NP_001030333 (OMIM: 176830,601665,609734) pro-opiomela  (267 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1648.4  bits: 312.7 E(85289): 4.5e-85
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KB8 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
              190       200       210       220       230       240

              250       260       
pF1KB8 MTSEKSQTPLVTLFKNAIIKNAYKKGE
       :::::::::::::::::::::::::::
NP_001 MTSEKSQTPLVTLFKNAIIKNAYKKGE
              250       260       

>>NP_000930 (OMIM: 176830,601665,609734) pro-opiomelanoc  (267 aa)
 initn: 1873 init1: 1873 opt: 1873  Z-score: 1648.4  bits: 312.7 E(85289): 4.5e-85
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 267 aa overlap (1-267:1-267)

               10        20        30        40        50        60
pF1KB8 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MPRSCCSRSGALLLALLLQASMEVRGWCLESSQCQDLTTESNLLECIRACKPDLSAETPM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 FPGNGDEQPLTENPRKYVMGHFRWDRFGRRNSSSSGSSGAGQKREDVSAGEDCGPLPEGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PEPRSDGAKPGPREGKRSYSMEHFRWGKPVGKKRRPVKVYPNGAEDESAEAFPLEFKREL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TGQRLREGDGPDGPADDGAGAQADLEHSLLVAAEKKDEGPYRMEHFRWGSPPKDKRYGGF
              190       200       210       220       230       240

              250       260       
pF1KB8 MTSEKSQTPLVTLFKNAIIKNAYKKGE
       :::::::::::::::::::::::::::
NP_000 MTSEKSQTPLVTLFKNAIIKNAYKKGE
              250       260       




267 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:01:45 2016 done: Sat Nov  5 20:01:46 2016
 Total Scan time:  6.940 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]