FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8932, 283 aa
  1>>>pF1KB8932 283 - 283 aa - 283 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2515+/-0.000798; mu= 1.2544+/- 0.049
 mean_var=310.4709+/-63.522, 0's: 0 Z-trim(118.3): 145  B-trim: 0 in 0/54
 Lambda= 0.072789
 statistics sampled from 19086 (19247) to 19086 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.844), E-opt: 0.2 (0.591), width:  16
 Scan time:  3.140

The best scores are:                                      opt bits E(32554)
CCDS9327.1 PDX1 gene_id:3651|Hs108|chr13           ( 283) 2029 225.3 3.8e-59


>>CCDS9327.1 PDX1 gene_id:3651|Hs108|chr13                (283 aa)
 initn: 2029 init1: 2029 opt: 2029  Z-score: 1175.3  bits: 225.3 E(32554): 3.8e-59
Smith-Waterman score: 2029; 100.0% identity (100.0% similar) in 283 aa overlap (1-283:1-283)

               10        20        30        40        50        60
pF1KB8 MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MNGEEQYYAATQLYKDPCAFQRGPAPEFSASPPACLYMGRQPPPPPPHPFPGALGALEQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 SPPDISPYEVPPLADDPAVAHLHHHLPAQLALPHPPAGPFPEGAEPGVLEEPNRVQLPFP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 WMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 WMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 VMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQDCAVTSGEELLALPP
              190       200       210       220       230       240

              250       260       270       280   
pF1KB8 PPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAPRRPQEPR
       :::::::::::::::::::::::::::::::::::::::::::
CCDS93 PPPPGGAVPPAAPVAAREGRLPPGLSASPQPSSVAPRRPQEPR
              250       260       270       280   




283 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:33:26 2016 done: Fri Nov  4 16:33:26 2016
 Total Scan time:  3.140 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]