Result of FASTA (omim) for
pF1KB8938
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8938, 290 aa
1>>>pF1KB8938 290 - 290 aa - 290 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.8311+/-0.00041; mu= -5.7833+/- 0.026
mean_var=480.3063+/-96.314, 0's: 0 Z-trim(125.4): 101 B-trim: 0 in 0/59
Lambda= 0.058521
statistics sampled from 48814 (48931) to 48814 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.574), width: 16
Scan time: 9.110
The best scores are: opt bits E(85289)
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 2069 188.0 1.9e-47
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 2052 186.5 5e-47
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 788 79.7 6e-15
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 788 79.7 6e-15
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 784 79.4 7.5e-15
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 777 78.8 1.1e-14
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 717 73.3 2.3e-13
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 414 48.2 2e-05
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 411 47.9 2.2e-05
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 406 47.4 2.8e-05
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 396 46.6 5.2e-05
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 396 46.6 5.2e-05
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 396 46.6 5.2e-05
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 396 46.7 6.1e-05
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 388 45.9 8.5e-05
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 379 45.3 0.00016
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 369 44.1 0.0002
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 45.3 0.00026
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 376 45.3 0.00026
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 45.3 0.00026
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 45.3 0.00026
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 45.3 0.00026
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 376 45.3 0.00026
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 376 45.3 0.00026
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 369 44.3 0.00026
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 362 43.7 0.00038
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 362 43.8 0.00043
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 339 42.0 0.0018
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 318 40.1 0.0054
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 318 40.1 0.0058
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 316 39.9 0.0061
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 40.3 0.008
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 40.3 0.008
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 40.3 0.008
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 40.3 0.008
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 40.3 0.008
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 317 40.3 0.008
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 40.3 0.008
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 317 40.3 0.008
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 310 39.4 0.0088
>>NP_062458 (OMIM: 142985) homeobox protein Hox-D8 isofo (290 aa)
initn: 2069 init1: 2069 opt: 2069 Z-score: 973.0 bits: 188.0 E(85289): 1.9e-47
Smith-Waterman score: 2069; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:1-290)
10 20 30 40 50 60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_062 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
250 260 270 280 290
>>NP_001186675 (OMIM: 142985) homeobox protein Hox-D8 is (289 aa)
initn: 1436 init1: 1436 opt: 2052 Z-score: 965.3 bits: 186.5 E(85289): 5e-47
Smith-Waterman score: 2052; 99.7% identity (99.7% similar) in 290 aa overlap (1-290:1-289)
10 20 30 40 50 60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 SPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSQMFPWMRPQA-PGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQ
190 200 210 220 230
250 260 270 280 290
pF1KB8 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
240 250 260 270 280
>>XP_016880053 (OMIM: 142963) PREDICTED: homeobox protei (243 aa)
initn: 941 init1: 699 opt: 788 Z-score: 389.4 bits: 79.7 E(85289): 6e-15
Smith-Waterman score: 878; 52.1% identity (68.8% similar) in 288 aa overlap (1-287:1-235)
10 20 30 40 50 60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
::::::: :.::::. ::.. :.:::: :: ..::: .. .:: :..:
XP_016 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
10 20 30 40
70 80 90 100 110 120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
. ::: . ::..: .. .: :: :
XP_016 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
50 60 70
130 140 150 160 170
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
:. .::::.:..::::: :::: .: .: . .:::: ::: ......::. . .::
XP_016 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
80 90 100 110 120
180 190 200 210 220 230
pF1KB8 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
XP_016 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
130 140 150 160 170 180
240 250 260 270 280 290
pF1KB8 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
::::::::::::::::::::::: :. : .. : :.. .. : ::
XP_016 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
190 200 210 220 230 240
>>NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [Homo (243 aa)
initn: 941 init1: 699 opt: 788 Z-score: 389.4 bits: 79.7 E(85289): 6e-15
Smith-Waterman score: 878; 52.1% identity (68.8% similar) in 288 aa overlap (1-287:1-235)
10 20 30 40 50 60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
::::::: :.::::. ::.. :.:::: :: ..::: .. .:: :..:
NP_076 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
10 20 30 40
70 80 90 100 110 120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
. ::: . ::..: .. .: :: :
NP_076 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
50 60 70
130 140 150 160 170
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
:. .::::.:..::::: :::: .: .: . .:::: ::: ......::. . .::
NP_076 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
80 90 100 110 120
180 190 200 210 220 230
pF1KB8 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
NP_076 PSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
130 140 150 160 170 180
240 250 260 270 280 290
pF1KB8 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
::::::::::::::::::::::: :. : .. : :.. .. : ::
NP_076 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
190 200 210 220 230 240
>>NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [Homo (242 aa)
initn: 885 init1: 646 opt: 784 Z-score: 387.6 bits: 79.4 E(85289): 7.5e-15
Smith-Waterman score: 917; 55.2% identity (68.8% similar) in 288 aa overlap (1-286:1-238)
10 20 30 40 50 60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
:::::::::.::::: ::...:.::::.: :: :: . . :.:: :
NP_073 MSSYFVNPLFSKYKA--------GESLEPAYYDCRFPQSVGRSHALVYGP----GGSAPG
10 20 30 40
70 80 90 100 110
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPG-GGSPAAAYQAAPPPPPHPPPPP
: :: .: : :..:: : .: ..:: :
NP_073 FQHA-----SH-HV----------------QDFFHHGTSGISNSGYQQNP----------
50 60 70
120 130 140 150 160 170
pF1KB8 PPPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSG-NIGEDPDHLNQ
:. ..:::. .:::::. : :: .. .:::: .:::::::::.. : .: ::::
NP_073 ----CS-LSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQ
80 90 100 110 120 130
180 190 200 210 220 230
pF1KB8 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE
.:::: :::::::.: :::: :::::::.:::::::::::::::::::::::::::.:::
NP_073 NSSPSLMFPWMRPHA-PGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTE
140 150 160 170 180 190
240 250 260 270 280 290
pF1KB8 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
::::::::::::::::::::::.: .:.: : : .: .: ::.. :
NP_073 RQVKIWFQNRRMKWKKENNKDKLPGARDEEKVEEEGNEEEEKEEEEKEENKD
200 210 220 230 240
>>XP_005257343 (OMIM: 142963) PREDICTED: homeobox protei (242 aa)
initn: 918 init1: 491 opt: 777 Z-score: 384.4 bits: 78.8 E(85289): 1.1e-14
Smith-Waterman score: 867; 52.1% identity (68.8% similar) in 288 aa overlap (1-287:1-234)
10 20 30 40 50 60
pF1KB8 MSSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG
::::::: :.::::. ::.. :.:::: :: ..::: .. .:: :..:
XP_005 MSSYFVNSLFSKYKT--------GESLRPNYYDCGFAQDLGGRPTV------VYGPSSGG
10 20 30 40
70 80 90 100 110 120
pF1KB8 FPHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPP
. ::: . ::..: .. .: :: :
XP_005 ---------SFQHPS-------------QIQEFYHGPSSLSTAPYQQNP-----------
50 60 70
130 140 150 160 170
pF1KB8 PPPCGGIACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCK-SSSGNIGEDPDHLNQS
:. .::::.:..::::: :::: .: .: . .:::: ::: ......::. . .::
XP_005 ---CA-VACHGDPGNFYGYDPLQRQSLFGAQ-DPDLVQYADCKLAAASGLGEEAEGSEQS
80 90 100 110 120
180 190 200 210 220 230
pF1KB8 SSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTER
::.:.::::::::: :::::::::::.:::::::::::::::::::::::::::.::::
XP_005 PSPTQLFPWMRPQAA-GRRRGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTER
130 140 150 160 170 180
240 250 260 270 280 290
pF1KB8 QVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
::::::::::::::::::::::: :. : .. : :.. .. : ::
XP_005 QVKIWFQNRRMKWKKENNKDKFPSSKCEQEELE-KQKLERAPEAADEGDAQKGDKK
190 200 210 220 230 240
>>NP_001186676 (OMIM: 142985) homeobox protein Hox-D8 is (106 aa)
initn: 717 init1: 717 opt: 717 Z-score: 361.1 bits: 73.3 E(85289): 2.3e-13
Smith-Waterman score: 717; 100.0% identity (100.0% similar) in 106 aa overlap (185-290:1-106)
160 170 180 190 200 210
pF1KB8 ELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEK
::::::::::::::::::::::::::::::
NP_001 MFPWMRPQAAPGRRRGRQTYSRFQTLELEK
10 20 30
220 230 240 250 260 270
pF1KB8 EFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETK
40 50 60 70 80 90
280 290
pF1KB8 KEAQELEEDRAEGLTN
::::::::::::::::
NP_001 KEAQELEEDRAEGLTN
100
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 366 init1: 366 opt: 414 Z-score: 218.6 bits: 48.2 E(85289): 2e-05
Smith-Waterman score: 460; 38.7% identity (58.7% similar) in 230 aa overlap (61-271:17-231)
40 50 60 70 80 90
pF1KB8 YYDCHFAPEVGGRHAAAAAALQLYGNSAAGFPHAPPQAHAHPHPSPPPSGTGCGGREGRG
:: ... :: : ::. :
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQ--RR
10 20 30 40
100 110 120 130 140
pF1KB8 QEYFHP--GGGSPAAA----YQA----APPPPPHPPPPPPPPPCGGIACHGEPAKFYGYD
. :.: : : :: : : .::::: ::::::::: :.. .. :
NP_076 ESSFQPEAGFGRRAACTVQRYAACRDPGPPPPPPPPPPPPPPP--GLSPRAPAPPPAG--
50 60 70 80 90 100
150 160 170 180 190
pF1KB8 NLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMR--------PQ
: .: . . : : ... . .:.: . . : ..:::: :.
NP_076 ALLPEPGQRCEAVSSSPPPPPC--AQNPLHPSPSH-SACKEPV-VYPWMRKVHVSTVNPN
110 120 130 140 150
200 210 220 230 240 250
pF1KB8 AAPGR-RRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMK
: :. .:.: .:.: :.::::::: .: ::::.::.:..::: :.:::.::::::::::
NP_076 YAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMK
160 170 180 190 200 210
260 270 280 290
pF1KB8 WKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
:::.. :.: .. ...:
NP_076 WKKDH---KLPNTK--IRSGGAAGSAGGPPGRPNGGPRAL
220 230 240 250
>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo (230 aa)
initn: 428 init1: 339 opt: 411 Z-score: 217.6 bits: 47.9 E(85289): 2.2e-05
Smith-Waterman score: 419; 41.6% identity (63.7% similar) in 190 aa overlap (97-286:39-217)
70 80 90 100 110 120
pF1KB8 QAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGG
: :. :.:. .. : . : : .
NP_008 ALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAGAFASTVPGLYNVNSPLYQSPFA-
10 20 30 40 50 60
130 140 150 160 170 180
pF1KB8 IACHGEPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMF
. .: : :: :: : . .:. . :.. . : : . . . ...
NP_008 -SGYGLGADAYG--NL---PCASYDQNIPGLCSDLAKGACDKTDEGALH-GAAEANFRIY
70 80 90 100 110 120
190 200 210 220 230 240
pF1KB8 PWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQ
:::: ...: :.::::::.:.::::::::: :: ::::.::::..::: :::::.:::::
NP_008 PWMR-SSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ
130 140 150 160 170
250 260 270 280 290
pF1KB8 NRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEEDRAEGLTN
:::::::::. ::. :.. . .: . . : :.:.
NP_008 NRRMKWKKEH-KDEGPTA-AAAPEGAVPSAAATAAADKADEEDDDEEEEDEEE
180 190 200 210 220 230
>>NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [Homo (217 aa)
initn: 427 init1: 345 opt: 406 Z-score: 215.6 bits: 47.4 E(85289): 2.8e-05
Smith-Waterman score: 436; 40.0% identity (61.3% similar) in 230 aa overlap (58-283:22-217)
30 40 50 60 70 80
pF1KB8 NPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAG-FPHAPPQAHAHPHPSPPPSGTGCGGR
:.: ::. : : .:. : :.: :.
NP_004 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFAS-NPQRPGYGAGSGAS
10 20 30 40 50
90 100 110 120 130 140
pF1KB8 EGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPPPPCGGIACHG---EPAKFYGYDNLQ
. ... ..::::. :. :.: .:. : ::..: :..
NP_004 FAASMQGLYPGGGGMAG--QSA----------------AGVYAAGYGLEPSSF----NMH
60 70 80
150 160 170 180 190 200
pF1KB8 RQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQSSSPSQMFPWMRPQAAPGRRRGRQT
:. .:. : : ...: :. : . : ...:::: ... :.:::::
NP_004 CAPF---EQNLSGVCPGDSAKAAGA-KEQRDSDLAAESNFRIYPWMR-SSGTDRKRGRQT
90 100 110 120 130 140
210 220 230 240 250 260
pF1KB8 YSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTERQVKIWFQNRRMKWKKENNKDKFPV
:.:.::::::::: .: ::::.::::..:.: :::::.::::::::::::::: : :
NP_004 YTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKEN-KTAGPG
150 160 170 180 190 200
270 280 290
pF1KB8 SRQEVKDGETKKEAQELEEDRAEGLTN
. :. . ::.: ::.
NP_004 TT-----GQDRAEAEEEEEE
210
290 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:35:45 2016 done: Fri Nov 4 16:35:46 2016
Total Scan time: 9.110 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]