FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8940, 297 aa 1>>>pF1KB8940 297 - 297 aa - 297 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.2632+/-0.000799; mu= -0.4885+/- 0.048 mean_var=222.1917+/-45.694, 0's: 0 Z-trim(116.1): 170 B-trim: 159 in 1/51 Lambda= 0.086042 statistics sampled from 16472 (16645) to 16472 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.511), width: 16 Scan time: 2.150 The best scores are: opt bits E(32554) CCDS3378.2 MSX1 gene_id:4487|Hs108|chr4 ( 303) 1963 255.4 3.8e-68 CCDS4392.1 MSX2 gene_id:4488|Hs108|chr5 ( 267) 839 115.9 3.4e-26 >>CCDS3378.2 MSX1 gene_id:4487|Hs108|chr4 (303 aa) initn: 1963 init1: 1963 opt: 1963 Z-score: 1337.0 bits: 255.4 E(32554): 3.8e-68 Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 297 aa overlap (1-297:7-303) 10 20 30 40 50 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MAPAADMTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPKVSPSLLP 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB8 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 FSVEALMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSV 70 80 90 100 110 120 120 130 140 150 160 170 pF1KB8 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 GGLLKLPEDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKTNRKPRTPFT 130 140 150 160 170 180 180 190 200 210 220 230 pF1KB8 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 TAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKM 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB8 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 AAKPMLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMY 250 260 270 280 290 300 pF1KB8 HLT ::: CCDS33 HLT >>CCDS4392.1 MSX2 gene_id:4488|Hs108|chr5 (267 aa) initn: 829 init1: 600 opt: 839 Z-score: 583.7 bits: 115.9 E(32554): 3.4e-26 Smith-Waterman score: 911; 58.9% identity (78.9% similar) in 275 aa overlap (25-297:16-267) 10 20 30 40 50 pF1KB8 MTSLPLGVKVEDSAFGKPAGGGAGQAPSAAAATAAAMGADEEGAKPK-VSPSLLPFSVEA ..:...:. . . :. : .:. . :. : ::::::: CCDS43 MASPSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEERRVKVSSLPFSVEA 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 LMADHRKPGAKESALAPSEGVQAAGGSAQPLGVPPGSLGAPDAPSSPRPLGHFSVGGLLK ::.:.. : ::.. :.:.. .::.. .:: . .. :: .: :: :: .: CCDS43 LMSDKKPP--KEASPLPAESA-SAGATLRPLLL--SGHGAREA-HSPGPL--------VK 60 70 80 90 120 130 140 150 160 170 pF1KB8 LPEDALVKAESPEKPERTPWMQSP-RFSPPPARRLSPPACTLRKHKTNRKPRTPFTTAQL : : ::.:. : . . ::: : :.:::: :..:: .::::::::::::::::::.:: CCDS43 PFETASVKSENSE--DGAAWMQEPGRYSPPP-RHMSPTTCTLRKHKTNRKPRTPFTTSQL 100 110 120 130 140 150 180 190 200 210 220 230 pF1KB8 LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: CCDS43 LALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKP 160 170 180 190 200 210 240 250 260 270 280 290 pF1KB8 MLPPAAFGLSFPLGGPAAVAAAAGASLYGASGPFQRAALPVAPVGLYTAHVGYSMYHLT ::: ..:.: ::...: . ::.:::: ::.: .::. :::::.. :::.::::. CCDS43 MLP-SSFSLPFPISSPLQA-----ASIYGASYPFHRPVLPIPPVGLYATPVGYGMYHLS 220 230 240 250 260 297 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 01:10:47 2016 done: Sat Nov 5 01:10:47 2016 Total Scan time: 2.150 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]