FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8952, 327 aa
  1>>>pF1KB8952 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.8580+/-0.000885; mu= -1.5916+/- 0.053
 mean_var=295.5506+/-61.016, 0's: 0 Z-trim(116.9): 2  B-trim: 177 in 1/50
 Lambda= 0.074603
 statistics sampled from 17541 (17543) to 17541 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.823), E-opt: 0.2 (0.539), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS5018.1 PNRC1 gene_id:10957|Hs108|chr6          ( 327) 2211 250.4 1.4e-66


>>CCDS5018.1 PNRC1 gene_id:10957|Hs108|chr6               (327 aa)
 initn: 2211 init1: 2211 opt: 2211  Z-score: 1308.6  bits: 250.4 E(32554): 1.4e-66
Smith-Waterman score: 2211; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KB8 MTVVSVPQREPLVLGGRLAPLGFSSRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MTVVSVPQREPLVLGGRLAPLGFSSRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LGGDGPCLTPQPRAPAALPNRSLAVAGGTPRAAPKKRRKKKVRASPAGQLPSRFHQYQQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LGGDGPCLTPQPRAPAALPNRSLAVAGGTPRAAPKKRRKKKVRASPAGQLPSRFHQYQQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RPSLEGGRSPATGPSGAQEVPGPAAALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 RPSLEGGRSPATGPSGAQEVPGPAAALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SSDRIQKQEKKPFKNTENIKNSHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SSDRIQKQEKKPFKNTENIKNSHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHW
              250       260       270       280       290       300

              310       320       
pF1KB8 MGSTVENSNQNRELMAVHLKTLLKVQT
       :::::::::::::::::::::::::::
CCDS50 MGSTVENSNQNRELMAVHLKTLLKVQT
              310       320       




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:39:15 2016 done: Fri Nov  4 16:39:16 2016
 Total Scan time:  2.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]