FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8952, 327 aa
  1>>>pF1KB8952 327 - 327 aa - 327 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4869+/-0.000344; mu= 0.7052+/- 0.021
 mean_var=323.9963+/-66.320, 0's: 0 Z-trim(124.5): 3  B-trim: 55 in 1/57
 Lambda= 0.071253
 statistics sampled from 46230 (46234) to 46230 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.542), width:  16
 Scan time:  7.910

The best scores are:                                      opt bits E(85289)
NP_006804 (OMIM: 606714) proline-rich nuclear rece ( 327) 2211 240.0 5.2e-63
XP_016857180 (OMIM: 611882) PREDICTED: proline-ric ( 139)  295 42.6 0.00057
NP_060231 (OMIM: 611882) proline-rich nuclear rece ( 139)  295 42.6 0.00057


>>NP_006804 (OMIM: 606714) proline-rich nuclear receptor  (327 aa)
 initn: 2211 init1: 2211 opt: 2211  Z-score: 1252.2  bits: 240.0 E(85289): 5.2e-63
Smith-Waterman score: 2211; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KB8 MTVVSVPQREPLVLGGRLAPLGFSSRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MTVVSVPQREPLVLGGRLAPLGFSSRGYFGALPMVTTAPPPLPRIPDPRALPPTLFLPHF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LGGDGPCLTPQPRAPAALPNRSLAVAGGTPRAAPKKRRKKKVRASPAGQLPSRFHQYQQH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LGGDGPCLTPQPRAPAALPNRSLAVAGGTPRAAPKKRRKKKVRASPAGQLPSRFHQYQQH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RPSLEGGRSPATGPSGAQEVPGPAAALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RPSLEGGRSPATGPSGAQEVPGPAAALAPSPAAAAGTEGASPDLAPLRPAAPGQTPLRKE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQKSKYNLPLTKITSAKRNENNFWQDSV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SSDRIQKQEKKPFKNTENIKNSHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SSDRIQKQEKKPFKNTENIKNSHLKKSAFLTEVSQKENYAGAKFSDPPSPSVLPKPPSHW
              250       260       270       280       290       300

              310       320       
pF1KB8 MGSTVENSNQNRELMAVHLKTLLKVQT
       :::::::::::::::::::::::::::
NP_006 MGSTVENSNQNRELMAVHLKTLLKVQT
              310       320       

>>XP_016857180 (OMIM: 611882) PREDICTED: proline-rich nu  (139 aa)
 initn: 281 init1: 186 opt: 295  Z-score: 192.3  bits: 42.6 E(85289): 0.00057
Smith-Waterman score: 295; 38.5% identity (71.3% similar) in 143 aa overlap (186-326:1-138)

         160       170       180       190       200       210     
pF1KB8 GTEGASPDLAPLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQK
                                     :: .:.  .:  :  ...   .: ..::::
XP_016                               MGGGERYNIPAPQ-SRNVS-KNQQQLNRQK
                                             10          20        

         220       230       240         250       260       270   
pF1KB8 SKYNLPLTKITSAKRNENNFWQDSVSSDRIQKQ--EKKPFKNTENIKNSHLKKSAFLTEV
       .: .    ::.  :..... ...:... . ...  ..: : :...  :: :.   .: . 
XP_016 TKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQNGGKNKNFPNNQSW-NSSLSGPRLLFKS
       30        40        50        60        70         80       

           280       290       300       310       320       
pF1KB8 SQKENYAGAKFSDPPSPSVLPKPPSHWMGSTVENSNQNRELMAVHLKTLLKVQT
       . ..::::::::.::::::::::::::.  . . :  ..:.:. .:::::::: 
XP_016 QANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFNPS--DKEIMTFQLKTLLKVQV
        90       100       110       120         130         

>>NP_060231 (OMIM: 611882) proline-rich nuclear receptor  (139 aa)
 initn: 281 init1: 186 opt: 295  Z-score: 192.3  bits: 42.6 E(85289): 0.00057
Smith-Waterman score: 295; 38.5% identity (71.3% similar) in 143 aa overlap (186-326:1-138)

         160       170       180       190       200       210     
pF1KB8 GTEGASPDLAPLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQLVHGIHLYEQPKINRQK
                                     :: .:.  .:  :  ...   .: ..::::
NP_060                               MGGGERYNIPAPQ-SRNVS-KNQQQLNRQK
                                             10          20        

         220       230       240         250       260       270   
pF1KB8 SKYNLPLTKITSAKRNENNFWQDSVSSDRIQKQ--EKKPFKNTENIKNSHLKKSAFLTEV
       .: .    ::.  :..... ...:... . ...  ..: : :...  :: :.   .: . 
NP_060 TKEQNSQMKIVHKKKERGHGYNSSAAAWQAMQNGGKNKNFPNNQSW-NSSLSGPRLLFKS
       30        40        50        60        70         80       

           280       290       300       310       320       
pF1KB8 SQKENYAGAKFSDPPSPSVLPKPPSHWMGSTVENSNQNRELMAVHLKTLLKVQT
       . ..::::::::.::::::::::::::.  . . :  ..:.:. .:::::::: 
NP_060 QANQNYAGAKFSEPPSPSVLPKPPSHWVPVSFNPS--DKEIMTFQLKTLLKVQV
        90       100       110       120         130         




327 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:39:16 2016 done: Fri Nov  4 16:39:17 2016
 Total Scan time:  7.910 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]