FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8958, 335 aa 1>>>pF1KB8958 335 - 335 aa - 335 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.0117+/-0.000789; mu= 9.7228+/- 0.048 mean_var=153.2191+/-32.316, 0's: 0 Z-trim(113.2): 176 B-trim: 858 in 3/51 Lambda= 0.103614 statistics sampled from 13679 (13868) to 13679 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.426), width: 16 Scan time: 2.970 The best scores are: opt bits E(32554) CCDS5401.1 HOXA1 gene_id:3198|Hs108|chr7 ( 335) 2307 356.2 2.2e-98 CCDS5402.2 HOXA1 gene_id:3198|Hs108|chr7 ( 137) 836 135.9 1.8e-32 CCDS32675.1 HOXB1 gene_id:3211|Hs108|chr17 ( 301) 625 104.7 1e-22 CCDS2271.1 HOXD1 gene_id:3231|Hs108|chr2 ( 328) 525 89.8 3.4e-18 >>CCDS5401.1 HOXA1 gene_id:3198|Hs108|chr7 (335 aa) initn: 2307 init1: 2307 opt: 2307 Z-score: 1879.6 bits: 356.2 E(32554): 2.2e-98 Smith-Waterman score: 2307; 99.7% identity (100.0% similar) in 335 aa overlap (1-335:1-335) 10 20 30 40 50 60 pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 IGSPHHHHHHHHRHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKEGLLPISPATP 250 260 270 280 290 300 310 320 330 pF1KB8 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH ::::::::::::::::::::::::::::::::::: CCDS54 PGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH 310 320 330 >>CCDS5402.2 HOXA1 gene_id:3198|Hs108|chr7 (137 aa) initn: 836 init1: 836 opt: 836 Z-score: 696.3 bits: 135.9 E(32554): 1.8e-32 Smith-Waterman score: 836; 99.2% identity (100.0% similar) in 118 aa overlap (1-118:1-118) 10 20 30 40 50 60 pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLVGRGVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 IGSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADVS ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS54 IGSPHHHHHHHHRHPQPATYQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALNQEADPP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 GGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSL CCDS54 RSLSLPRIGDIFSSADF 130 >>CCDS32675.1 HOXB1 gene_id:3211|Hs108|chr17 (301 aa) initn: 614 init1: 377 opt: 625 Z-score: 521.4 bits: 104.7 E(32554): 1e-22 Smith-Waterman score: 731; 45.9% identity (67.1% similar) in 340 aa overlap (1-328:1-301) 10 20 30 40 50 pF1KB8 MDNARMNSFLEYPILSSGDSGTCSARAYPSDHRITTFQ-SCAVSANSCGGDDRFLVGRGV :: :::::::::. . : :. ::.. : :.: : : ...: ... :. : : CCDS32 MDYNRMNSFLEYPLCNRGPSAY-SAHSAP-----TSFPPSSAQAVDSYASEGRY--GGG- 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 QIGSPHHHHHHHHHHPQPAT-----YQTSGNLGVSYSHSSCGPSYGSQNFSAPYSPYALN ..:: ... . :: . . .:. : :. ..:.:::: : . : :. CCDS32 -LSSPAFQQNSGYPAQQPPSTLGVPFPSSAPSG--YAPAACSPSYG------PSQYYPLG 60 70 80 90 100 120 130 140 150 160 170 pF1KB8 Q-EADVSGGYPQCAPAVYSGNLSSPMVQHHHHHQGYAGGAVGSPQYI--HHSYGQEHQSL : :.: ::: . :. :...:.. .::..:..: : : ::.:. . CCDS32 QSEGD--GGYFH--PSSYGAQLGG-------LSDGYGAGGAGPGPYPPQHPPYGNEQTAS 110 120 130 140 150 180 190 200 210 220 230 pF1KB8 ALATYNNSLSPLHASHQEACRSPASETSSP-AQTFDWMKVKRNPPKTGKVGEYGYLGQPN .: . :: ... : : :: ..: :.::::::::::::::.::.: : ::.:. CCDS32 FAPAYADLLS---EDKETPC--P-SEPNTPTARTFDWMKVKRNPPKTAKVSEPG-LGSPS 160 170 180 190 200 240 250 260 270 280 290 pF1KB8 AVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKREKE ..::::::.:::::::::::::::.:::::::::.:.:::::::::::::::::::::.: CCDS32 GLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 210 220 230 240 250 260 300 310 320 330 pF1KB8 -GLLPISPATPPGND-EKAEESSEKSSSSPCVPSPGSSTSDTLTTSH : .: :: ::: : : ..:..:. . ::.: :: CCDS32 EGRVP--PA-PPGCPKEAAGDASDQSTCTSPEASPSSVTS 270 280 290 300 >>CCDS2271.1 HOXD1 gene_id:3231|Hs108|chr2 (328 aa) initn: 535 init1: 499 opt: 525 Z-score: 440.1 bits: 89.8 E(32554): 3.4e-18 Smith-Waterman score: 535; 37.0% identity (58.7% similar) in 341 aa overlap (6-328:1-328) 10 20 30 40 50 pF1KB8 MDNARMNSFLEYPILSS-----GDSGTCSARAYPSDHRITTFQSCAVSANSCGGDDRFLV :.:.::: :: :: . . . :: : ...: .: :: :. CCDS22 MSSYLEYVSCSSSGGVGGDVLSLAPKFCRSDARPVALQPAFPLGN---GDGAFVS 10 20 30 40 50 60 70 80 90 100 pF1KB8 GRGVQIGSPHHHHHHHHHHPQ---PATYQTS-----GNL--GVSYSHSSCGPSYGSQNFS . . : .:. ::. : . : :.. . .. : .:: . . CCDS22 CLPLAAARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSG 60 70 80 90 100 110 110 120 130 140 150 160 pF1KB8 APYS-PYALNQEADVSGGYPQCAP-AVYSGNLSSPMVQHHHHHQGYAGGAVGS-PQYIHH :. : .:.. :: .:.. . : ::.::. .: ... . . .. : : : .. CCDS22 PAYDFPGVLGRAADDGGSHVHYATSAVFSGG-GSFLLSGQVDYAAF--GEPGPFPACLKA 120 130 140 150 160 170 180 190 200 210 220 pF1KB8 SYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDWMKVKRNPPKTGKVGE : . .. : :: ... .. :::: . .::.::::::: : ::..: CCDS22 SADGHPGAFQTA------SPAPGTYPKSV-SPASGLPAAFSTFEWMKVKRNASKKGKLAE 170 180 190 200 210 220 230 240 250 260 270 280 pF1KB8 YGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRM :: . .:.::::.::::::::::::::::::::::.::: :.::.:::::::::::: CCDS22 YGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRM 230 240 250 260 270 280 290 300 310 320 330 pF1KB8 KQKKREKEGLLPISPATPPGNDEKAEESSEKSSSSPCVPSPGSSTSDTLTTSH ::::::.:::: . . : . . . : ..: :: .. : CCDS22 KQKKREREGLLATAIPVAPLQLPLSGTTPTKFIKNPGSPSQSQEPS 290 300 310 320 335 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:40:54 2016 done: Fri Nov 4 16:40:54 2016 Total Scan time: 2.970 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]