Result of FASTA (omim) for
pF1KB8961
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8961, 342 aa
1>>>pF1KB8961 342 - 342 aa - 342 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.0699+/-0.000395; mu= -1.1501+/- 0.025
mean_var=449.4317+/-89.631, 0's: 0 Z-trim(125.4): 112 B-trim: 0 in 0/60
Lambda= 0.060498
statistics sampled from 48982 (49115) to 48982 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.576), width: 16
Scan time: 9.200
The best scores are: opt bits E(85289)
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 2363 219.7 7.5e-57
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 531 59.6 8.5e-09
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 510 57.8 3.1e-08
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 475 54.7 2.5e-07
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 439 51.7 2.6e-06
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 422 50.4 8.2e-06
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 404 48.7 2.2e-05
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 364 45.1 0.00021
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 349 43.8 0.00058
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 340 42.9 0.00082
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 343 43.4 0.00087
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 338 42.7 0.00094
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 332 42.3 0.0015
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 330 42.2 0.0018
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 321 41.5 0.0036
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 314 40.6 0.0041
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 313 40.6 0.0044
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 313 40.6 0.0044
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 312 40.4 0.0044
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 311 40.4 0.0049
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 309 40.5 0.0074
XP_011533177 (OMIM: 600297) PREDICTED: homeobox pr ( 321) 304 39.9 0.0089
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 300 39.4 0.0091
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 300 39.4 0.0091
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 300 39.4 0.0091
NP_004518 (OMIM: 214300,600147) homeobox protein M ( 254) 301 39.5 0.0093
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 2363 init1: 2363 opt: 2363 Z-score: 1141.6 bits: 219.7 E(85289): 7.5e-57
Smith-Waterman score: 2363; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:11-352)
10 20 30 40 50
pF1KB8 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATA
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MLGGSAGRLKMSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 AEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 STSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSS
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 EPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLEL
250 260 270 280 290 300
300 310 320 330 340
pF1KB8 EKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 EKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
310 320 330 340 350
>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa)
initn: 827 init1: 515 opt: 531 Z-score: 278.9 bits: 59.6 E(85289): 8.5e-09
Smith-Waterman score: 823; 46.9% identity (62.1% similar) in 343 aa overlap (1-340:1-257)
10 20 30 40 50
pF1KB8 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQ---GRPAGVADGPAATAAEFASCS
::..: .:::::::::.:......:.:: :. ::. .::.:.. : . .: :::
NP_008 MSATGPISNYYVDSLISHDNEDLLASRF--PATGAHPAAARPSGLV--PDCS--DFPSCS
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 FAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFP
:::. ::::.::. :::: : .:::: : : :.:.. ::.:.:.::: :
NP_008 FAPKPAVFSTSWAPVPSQS------SVVYHPYGPQPHLGADT----RYMRTWLEPLSG--
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 GGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSS
:: ::.::::..::. : :.
NP_008 -----------------AVSFPSFPAGGRHYALKPD--AYPG------------------
110 120
180 190 200 210 220 230
pF1KB8 SKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSD
.:..:. ..: : :.. .: :: : : : : .:
NP_008 -RRADCG---PGEGRSYPDYMYGS--------------PGELRDRAPQTLPSPEADA---
130 140 150 160
240 250 260 270 280 290
pF1KB8 HPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFN
. : . ::: . .:::.::.:::::::::::::::::::::::::::::::
NP_008 --LAGSKHKEE--------KADLDPSNPVANWIHARSTRKKRCPYTKYQTLELEKEFLFN
170 180 190 200 210
300 310 320 330 340
pF1KB8 MYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
:::::::::::::.::::::::::::::::::::::.::: :
NP_008 MYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
220 230 240 250 260
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 688 init1: 494 opt: 510 Z-score: 268.8 bits: 57.8 E(85289): 3.1e-08
Smith-Waterman score: 719; 43.1% identity (58.7% similar) in 346 aa overlap (1-337:1-268)
10 20 30 40 50
pF1KB8 MSSSGTLSNYYVDS-LIGHEG-DEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSF
:...:.:.:::::: :.: .. ::. ..:. .::. :.: : . : .:. :::
NP_689 MATTGALGNYYVDSFLLGADAADELSVGRY---APGTLGQPPRQA-ATLAEHPDFSPCSF
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 APRSAVFSASWSAVPSQP----PAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLP
...::.:::. : . :::. .:::: : .:.:. :::.:::.:: :
NP_689 QSKATVFGASWNPVHAAGANAVPAAVYHHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTP
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 GFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSL
: . :: :: : :::::: : : .. . .. .:
NP_689 GALSFAGL------------PSSRP--------YGIKPE----PLSARRGDCPTLDTHTL
120 130 140 150
180 190 200 210 220 230
pF1KB8 SSSSKRTECS---VARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSE
: .. :. : ::.: : : .: ...: .:: :
NP_689 SLTD--YACGSPPVDREKQPSEG------AFSENNAENESGGDKP---------------
160 170 180
240 250 260 270 280 290
pF1KB8 PSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELE
:: :::::::::.::::::::::::::.::::::
NP_689 -------PI--------------------DPNNPAANWLHARSTRKKRCPYTKHQTLELE
190 200 210 220
300 310 320 330 340
pF1KB8 KEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
:::::::::::::::::::.:::::::::::::::::::::..:..
NP_689 KEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
230 240 250 260 270
>>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa)
initn: 674 init1: 467 opt: 475 Z-score: 252.7 bits: 54.7 E(85289): 2.5e-07
Smith-Waterman score: 687; 41.8% identity (58.5% similar) in 337 aa overlap (1-337:1-247)
10 20 30 40 50 60
pF1KB8 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSFAP
:: :::::.:::::.:.::.... :.: : : :..: : :. :: :::: :
NP_076 MSISGTLSSYYVDSIISHESEDAPPAKF-PSGQYASSRQPGHAEH-----LEFPSCSFQP
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 RSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPLPGFPGGA
.. ::.:::. : .: :.... ..::::. : . . : ::.:.:.:: :
NP_076 KAPVFGASWA--PLSPHASGSLPSVYHPYIQPQGVPPAES---RYLRTWLEPAPR-----
60 70 80 90 100
130 140 150 160 170 180
pF1KB8 GGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKR
: ..::.: . . : : ::. .: :
NP_076 ------GEAAPGQGQAAVKAEPLLG-----------APGELLKQGTPEYS----------
110 120 130
190 200 210 220 230 240
pF1KB8 TECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPI
: :..:: :. .. :: : :. :
NP_076 LETSAGRE--------------------AVLSNQRPGYG-----------------DNKI
140 150 160
250 260 270 280 290 300
pF1KB8 PGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYL
: .:.... :.: .::.:::.::::.:::::::::::::::::::::::::
NP_076 --CEGSEDKER---PDQ-----TNPSANWLHARSSRKKRCPYTKYQTLELEKEFLFNMYL
170 180 190 200 210
310 320 330 340
pF1KB8 TRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
:::::.::::.:::.::::::::::::::::::.::.
NP_076 TRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNKEQGKE
220 230 240 250
>>NP_002139 (OMIM: 142984,192950) homeobox protein Hox-D (340 aa)
initn: 468 init1: 385 opt: 439 Z-score: 234.2 bits: 51.7 E(85289): 2.6e-06
Smith-Waterman score: 443; 30.9% identity (57.2% similar) in 353 aa overlap (2-336:5-327)
10 20 30 40 50
pF1KB8 MSSSGTLSNYYVDSLIGHEGDEVF----AARFGPPGPGAQGRPAGVADGPAATAAEF
.:: . ... :::::. .. : :. . :: :.:. :.
NP_002 MSFPNSSPAANTFLVDSLISACRSDSFYSSSASMYMPP-PSADMGTYGMQ----------
10 20 30 40
60 70 80 90 100
pF1KB8 ASCSFAPRSAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVR-----S
.:.. : : . : : :. :::.: . : ..:.: : .
NP_002 -TCGLLP-----SLAKREVNHQ-----NMGMNVHPYIPQ---VDSWTDPNRSCRIEQPVT
50 60 70 80 90
110 120 130 140 150 160
pF1KB8 WMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIK-P-ETRAAPAPA--TAA
. : .: . .. . :. . :. : . : :. .:.:. .
NP_002 QQVPTCSFTTNIKEESNCCMYSDKRNKLISAEVPSYQRLVPESCPVENPEVPVPGYFRLS
100 110 120 130 140 150
170 180 190 200 210
pF1KB8 STTSSSSTSLSSSSKRTECSVARE--SQGSSGPEFSCNSF-LQEKAAAATGGTGPG--AG
.: ....:. ..: . .: . .:.. :..: .. ...: ..: : .
NP_002 QTYATGKTQEYNNSPEGSSTVMLQLNPRGAAKPQLSAAQLQMEKKMNEPVSGQEPTKVSQ
160 170 180 190 200 210
220 230 240 250 260 270
pF1KB8 IGAATGTGGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKR
. . . :: : .: . :.. : :... ..... ..:..::. :.: ::::
NP_002 VESPEAKGGLPEERSC----LAEVSVSSPEVQEKE-SKEEIKSDTPTSNWLTAKSGRKKR
220 230 240 250 260 270
280 290 300 310 320 330
pF1KB8 CPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCP
:::::.:::::::::::::::::.:: :... .:::.:::::::::::::.::::.:
NP_002 CPYTKHQTLELEKEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKLKKMSRENRI
280 290 300 310 320 330
340
pF1KB8 KGD
NP_002 RELTANLTFS
340
>>NP_061824 (OMIM: 142957) homeobox protein Hox-A10 [Hom (410 aa)
initn: 607 init1: 389 opt: 422 Z-score: 225.3 bits: 50.4 E(85289): 8.2e-06
Smith-Waterman score: 514; 37.5% identity (56.2% similar) in 315 aa overlap (29-336:132-397)
10 20 30 40 50
pF1KB8 MSSSGTLSNYYVDSLIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSF
::: : : : : : . .::::
NP_061 GLGPGAHGYGPSPIDLWLDAPRSCRMEPPDGPPPPPQQQPPP--PPQPPQPAPQATSCSF
110 120 130 140 150
60 70 80 90 100 110
pF1KB8 APR-----SAVFSASWSAVPSQPPAAAAMSGLYHPYVPPPPLAASASEPGRYVRSWMEPL
: : . : . :. .:: .. . : ::: : .. : : .... :
NP_061 AQNIKEESSYCLYDSADKCPKVSATAAELAPF--PRGPPPDGCALGTSSGVPVPGYFR-L
160 170 180 190 200 210
120 130 140 150 160 170
pF1KB8 PGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTS
: : : :.::::. : .: :. : :: . . : :: : :
NP_061 SQAYGTAKGYGSGGGGAQQLGAGPFPAQPP-GRGFDL-P-------PALA---------S
220 230 240 250
180 190 200 210 220 230
pF1KB8 LSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPS
:... : : : .. : ..: :.: :.. : . ..::
NP_061 GSADAARKE----RALDSPPPPTLAC-------------GSG-GGSQGDEEAHASSSAAE
260 270 280 290 300
240 250 260 270 280 290
pF1KB8 ACSDHPIPGCSLKEEEKQHSQPQQQQL--DPNNPAANWIHARSTRKKRCPYTKYQTLELE
: : :. :.....:....: . .. ::::. :.: :::::::::.::::::
NP_061 ELS--PAPS------ESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELE
310 320 330 340 350
300 310 320 330 340
pF1KB8 KEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
:::::::::::.:: :..: ..::.:::::::::::::.:::..:
NP_061 KEFLFNMYLTRERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNRENRIRELTANFNFS
360 370 380 390 400 410
>>NP_059105 (OMIM: 605560) homeobox protein Hox-C10 [Hom (342 aa)
initn: 437 init1: 384 opt: 404 Z-score: 217.7 bits: 48.7 E(85289): 2.2e-05
Smith-Waterman score: 422; 38.5% identity (61.5% similar) in 213 aa overlap (140-336:122-329)
110 120 130 140 150 160
pF1KB8 MEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPET----RAAPAPATAAS
::: . . ::. . .:.:
NP_059 VGRPLSSCSYPPSVKEENVCCMYSAEKRAKSGPEAALYSHPLPESCLGEHEVPVP-----
100 110 120 130 140
170 180 190 200 210 220
pF1KB8 TTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGT-----GPGAGI
. .: : :. .: .:: : . .. . : : .. . :: : .
NP_059 SYYRASPSYSALDKTPHCSGANDFEAPFEQRASLNPRAEHLESPQLGGKVSFPETPKSDS
150 160 170 180 190 200
230 240 250 260 270
pF1KB8 GAATGTGGSSEPSACSDHPIPGCSLKEEEKQ-HSQPQ------QQQLDPNNPAANWIHAR
. . . ..: : . . :. : ::. : :.:. .... .: ..::. :.
NP_059 QTPSPNEIKTEQSLAGPKGSPSESEKERAKAADSSPDTSDNEAKEEIKAENTTGNWLTAK
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB8 STRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKM
: :::::::::.:::::::::::::::::.:: :... .:::.:::::::::::::.:::
NP_059 SGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKM
270 280 290 300 310 320
340
pF1KB8 SKEKCPKGD
..:
NP_059 NRENRIRELTSNFNFT
330 340
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 332 init1: 264 opt: 364 Z-score: 200.0 bits: 45.1 E(85289): 0.00021
Smith-Waterman score: 364; 36.4% identity (60.0% similar) in 225 aa overlap (124-337:43-257)
100 110 120 130 140 150
pF1KB8 PLAASASEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPE
: : : : : : :: . :.: .
NP_061 YPNGPDYQLHNYGDHSSVSEQFRDSASMHSGRYGYGYNGMDLSVGRSGSG---HFGSGER
20 30 40 50 60
160 170 180 190 200
pF1KB8 TRAAPAPATAASTTSS-SSTSLSSSSKRTE---CSVARESQGSSGPEFSCNSFLQEKAAA
.:. : :.:: . :. . :. : . . ::.. : ::.. . . ::. . ..:.
NP_061 ARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGGKNSLSNSSGAS
70 80 90 100 110 120
210 220 230 240 250 260
pF1KB8 ATGGT---GPGAGIGAATGT----GGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDP
: .:. . :.:.:.:. .::: .. ...: :. . . : ...:
NP_061 ADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPA----PPAQPQIYPWMRKLHI
130 140 150 160 170 180
270 280 290 300 310 320
pF1KB8 NNPAANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIW
.. : . .. : ::.:::::::::: :: :::: :: :.:. : :.:::.:::
NP_061 SHDN---IGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIW
190 200 210 220 230 240
330 340
pF1KB8 FQNRRMKMKKMSKEKCPKGD
::::::: :: .: :
NP_061 FQNRRMKWKKDNKLKSMSMAAAGGAFRP
250 260 270
>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa)
initn: 441 init1: 305 opt: 349 Z-score: 192.2 bits: 43.8 E(85289): 0.00058
Smith-Waterman score: 360; 28.8% identity (57.1% similar) in 312 aa overlap (45-337:7-303)
20 30 40 50 60 70
pF1KB8 LIGHEGDEVFAARFGPPGPGAQGRPAGVADGPAATAAEFASCSFAPRSAVFSASWSAVPS
:: .. . ::.. . ::. : .:
NP_005 MDFDERGPCSSNMYLPSCTYYVSGPDFSSLPSFLP-
10 20 30
80 90 100 110 120 130
pF1KB8 QPPAAAAMSGLYHPYVPPPPLAASASEPGRYV--RSW-MEPLPGF-PGGAGGGGGGGGGG
: :.. :. : .: .: : : : . .:: . : : . ..
NP_005 QTPSSRPMTYSYSSNLP-------QVQPVREVTFREYAIEPATKWHPRGNLAHCYSAEEL
40 50 60 70 80
140 150 160 170
pF1KB8 PGRGPSPGPSGPANGRHYGIKPETRAA----PAPATAASTTSSSSTS----------LSS
: .:: : : . .. : :.::.... :. . . . .
NP_005 VHRDCLQAPS--AAGVPGDVLAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFET
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB8 SSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTG-PGAGIGAATGTGGSSEPSAC
. : .. . :... : . . .::::...:: :... . . : :: : .:
NP_005 AYGTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAA
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB8 SDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTRKKRCPYTKYQTLELEKEFL
... ... .. :.:.... .. :.. : :::::::::::: :::.::.
NP_005 AEEK----ERRRRPESSSSPESSSGHTEDKAGGSSGQR-TRKKRCPYTKYQIRELEREFF
210 220 230 240 250 260
300 310 320 330 340
pF1KB8 FNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
:..:.....: ...:.::::.::::::::::::: ::.....
NP_005 FSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
270 280 290 300 310
>>NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [Homo (230 aa)
initn: 368 init1: 274 opt: 340 Z-score: 189.4 bits: 42.9 E(85289): 0.00082
Smith-Waterman score: 340; 36.8% identity (61.6% similar) in 185 aa overlap (159-339:16-194)
130 140 150 160 170 180
pF1KB8 GGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKRTECSVARE
: :. ... .: :.. .:.:. ...
NP_008 MSSSYYVNALFSKYTAGASLFQNAEPTSCSFAPNSQRSGYGAGAG
10 20 30 40
190 200 210 220 230 240
pF1KB8 SQGSSGPE-FSCNSFLQEKAAAATGGTGPGAGIGAATGTGGSSEPSACSDHPIPGCSLKE
. .:. : .. :: : .. :. : : : . .. .. :. ::: .:. .
NP_008 AFASTVPGLYNVNSPLYQSPFASGYGLGADAYGNLPCASYDQNIPGLCSDLAKGACDKTD
50 60 70 80 90 100
250 260 270 280 290 300
pF1KB8 EEKQHSQPQQQ-QLDPNNPAANWIHARSTRKKRC--PYTKYQTLELEKEFLFNMYLTRDR
: :. . . .. : :... . .:: ::.:::::::::: :: :::: :
NP_008 EGALHGAAEANFRIYP------WMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRR
110 120 130 140 150
310 320 330 340
pF1KB8 RYEVARILNLTERQVKIWFQNRRMKMKKMSKEKCPKGD
: :.:. : :::::.:::::::::: :: :.. :
NP_008 RIEIAHALCLTERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEE
160 170 180 190 200 210
NP_008 DDDEEEEDEEE
220 230
342 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:49:06 2016 done: Sat Nov 5 00:49:08 2016
Total Scan time: 9.200 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]