FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8989, 390 aa 1>>>pF1KB8989 390 - 390 aa - 390 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.2826+/-0.000448; mu= 4.0918+/- 0.028 mean_var=198.6037+/-39.453, 0's: 0 Z-trim(117.4): 5 B-trim: 419 in 1/51 Lambda= 0.091008 statistics sampled from 29293 (29296) to 29293 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.343), width: 16 Scan time: 9.060 The best scores are: opt bits E(85289) NP_036364 (OMIM: 603198,613327) polymerase I and t ( 390) 2422 330.6 4e-90 XP_005257299 (OMIM: 603198,613327) PREDICTED: poly ( 225) 991 142.5 9.6e-34 NP_004648 (OMIM: 606728) serum deprivation-respons ( 425) 647 97.5 6.1e-20 >>NP_036364 (OMIM: 603198,613327) polymerase I and trans (390 aa) initn: 2422 init1: 2422 opt: 2422 Z-score: 1739.0 bits: 330.6 E(85289): 4e-90 Smith-Waterman score: 2422; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390) 10 20 30 40 50 60 pF1KB8 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKESEALPE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 KEGEELGEGERPEEDAAALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 KEGEELGEGERPEEDAAALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSKEK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 MEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAERREKLKTSRDKLRKS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 FTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGADDDEGGAERGEAGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 FTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGADDDEGGAERGEAGD 310 320 330 340 350 360 370 380 390 pF1KB8 LRRGSSPDVHALLEITEESDAVLVDKSDSD :::::::::::::::::::::::::::::: NP_036 LRRGSSPDVHALLEITEESDAVLVDKSDSD 370 380 390 >>XP_005257299 (OMIM: 603198,613327) PREDICTED: polymera (225 aa) initn: 988 init1: 988 opt: 991 Z-score: 726.8 bits: 142.5 E(85289): 9.6e-34 Smith-Waterman score: 991; 86.2% identity (89.2% similar) in 195 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KB8 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGAGSEELIKSDQVNGVLVLSLLDK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVRKVSVN 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVK--LPAKLSISKSLKESEAL ::::::::::::::::::::::::::::::::::::: . : :. :. : . . : XP_005 VKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQPKKKPNAPSDLATPKIVPFD--L 130 140 150 160 170 180 190 200 210 220 230 pF1KB8 PEKEGEELGEGERPEEDAAALELSSDEAVEVEEVIEESRAERIKRSGLRRVDDFKKAFSK :: : .: :: XP_005 PETEPFDLKPETVPELPPFDQTPRALPYYPEPGPRPTPEELTAGGSV 180 190 200 210 220 >>NP_004648 (OMIM: 606728) serum deprivation-response pr (425 aa) initn: 680 init1: 418 opt: 647 Z-score: 479.0 bits: 97.5 E(85289): 6.1e-20 Smith-Waterman score: 703; 38.5% identity (67.5% similar) in 382 aa overlap (14-379:14-355) 10 20 30 40 50 pF1KB8 MEDPTLYIVERPLPGYPDAEAPEPSSAGAQAAEEPSGA----GSEELIKSD-QVNGVLVL :: : . .::: . . . :: . ..:: :... :::.: :: NP_004 MGEDAAQAEKFQHPG-SDMRQEKPSSPSPMPSSTPSPSLNLGNTEEAIRDNSQVNAVTVL 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 SLLDKIIGAVDQIQLTQAQLEERQAEMEGAVQSIQGELSKLGKAHATTSNTVSKLLEKVR .::::... .: .: .: ..:.:: .::.:..::..:.::.: .:.::::::::::: : NP_004 TLLDKLVNMLDAVQENQHKMEQRQISLEGSVKGIQNDLTKLSKYQASTSNTVSKLLEKSR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KB8 KVSVNVKTVRGSLERQAGQIKKLEVNEAELLRRRNFKVMIYQDEVKLPAKLSISKSLKES :::.....:. ..:: .:.:.:: :.:.:::: .:::.:.:.: ..::.. ... . : NP_004 KVSAHTRAVKERMDRQCAQVKRLENNHAQLLRRNHFKVLIFQEENEIPASVFVKQPV--S 120 130 140 150 160 170 180 190 200 210 220 pF1KB8 EALPEKEGEELGEGERPEEDAAALELSSD-------EAVE--VEEVIEESRAERIKRSGL :. :: : :.. :: ...:::: ::.: .:: .::::::.::::.: NP_004 GAVEGKE-ELPDENKSLEETLHTVDLSSDDDLPHDEEALEDSAEEKVEESRAEKIKRSSL 180 190 200 210 220 230 230 240 250 260 270 280 pF1KB8 RRVDDFKKAFSKEKMEKTKVRTRENLEKTRLKTKENLEKTRHTLEKRMNKLGTRLVPAER ..::..::::: :...::.::::::..: .:: NP_004 KKVDSLKKAFS-----------------------------RQNIEKKMNKLGTKIVSVER 240 250 260 290 300 310 320 330 340 pF1KB8 REKLKTSRDKLRKSFTPDHVVYARSKTAVYKVPPFTFHVKKIREGQVEVLKATEMVEVGA :::.: ::.: .: . .:.. .:: :.:: ::.:::. .. . :. .. . NP_004 REKIK-------KSLTSNHQKISSGKSSPFKVSPLTFGRKKVREGESHAENETKSEDLPS 270 280 290 300 310 320 350 360 370 380 390 pF1KB8 DDDEGGAERGEAGDLRRGSSPDVHALLE--ITEESDAVLVDKSDSD ... . .. :. .. . . ::.: :.::. NP_004 SEQMPNDQEEESFAEGHSEASLASALVEGEIAEEAAEKATSRGSNSGMDSNIDLTIVEDE 330 340 350 360 370 380 NP_004 EEESVALEQAQKVRYEGSYALTSEEAERSDGDPVQPAVLQVHQTS 390 400 410 420 390 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:52:34 2016 done: Fri Nov 4 16:52:36 2016 Total Scan time: 9.060 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]