FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8993, 401 aa 1>>>pF1KB8993 401 - 401 aa - 401 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.4291+/-0.000352; mu= 12.4397+/- 0.022 mean_var=95.5240+/-19.886, 0's: 0 Z-trim(116.6): 31 B-trim: 1172 in 1/49 Lambda= 0.131225 statistics sampled from 27950 (27976) to 27950 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.328), width: 16 Scan time: 8.700 The best scores are: opt bits E(85289) NP_149099 (OMIM: 400029,415000) heat shock transcr ( 401) 2641 510.1 3.9e-144 XP_005262622 (OMIM: 400029,415000) PREDICTED: heat ( 323) 2104 408.4 1.3e-113 XP_016885574 (OMIM: 400029,415000) PREDICTED: heat ( 328) 2104 408.4 1.3e-113 NP_689797 (OMIM: 400029,415000) heat shock transcr ( 203) 1125 222.9 5.5e-58 NP_001230023 (OMIM: 140581) heat shock factor prot ( 230) 169 42.0 0.0018 NP_001129036 (OMIM: 140581) heat shock factor prot ( 518) 169 42.1 0.0037 NP_004497 (OMIM: 140581) heat shock factor protein ( 536) 169 42.1 0.0038 >>NP_149099 (OMIM: 400029,415000) heat shock transcripti (401 aa) initn: 2641 init1: 2641 opt: 2641 Z-score: 2708.7 bits: 510.1 E(85289): 3.9e-144 Smith-Waterman score: 2641; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401) 10 20 30 40 50 60 pF1KB8 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 ASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 ASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLTTIH 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPLVSVNEAPYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPLVSVNEAPYR 310 320 330 340 350 360 370 380 390 400 pF1KB8 NMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN ::::::::::::::::::::::::::::::::::::::::: NP_149 NMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN 370 380 390 400 >>XP_005262622 (OMIM: 400029,415000) PREDICTED: heat sho (323 aa) initn: 2104 init1: 2104 opt: 2104 Z-score: 2160.7 bits: 408.4 E(85289): 1.3e-113 Smith-Waterman score: 2104; 100.0% identity (100.0% similar) in 320 aa overlap (82-401:4-323) 60 70 80 90 100 110 pF1KB8 SQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEEL :::::::::::::::::::::::::::::: XP_005 MLFRKLWKIVESDQFKSISWDENGTCIVINEEL 10 20 30 120 130 140 150 160 170 pF1KB8 FKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 FKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSK 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB8 LKFYYNPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LKFYYNPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAA 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB8 EASEESLFSASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EASEESLFSASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHA 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB8 ILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPL 220 230 240 250 260 270 360 370 380 390 400 pF1KB8 VSVNEAPYRNMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN :::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VSVNEAPYRNMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN 280 290 300 310 320 >>XP_016885574 (OMIM: 400029,415000) PREDICTED: heat sho (328 aa) initn: 2104 init1: 2104 opt: 2104 Z-score: 2160.6 bits: 408.4 E(85289): 1.3e-113 Smith-Waterman score: 2104; 100.0% identity (100.0% similar) in 320 aa overlap (82-401:9-328) 60 70 80 90 100 110 pF1KB8 SQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEEL :::::::::::::::::::::::::::::: XP_016 MALRHLVARKLWKIVESDQFKSISWDENGTCIVINEEL 10 20 30 120 130 140 150 160 170 pF1KB8 FKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSK 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB8 LKFYYNPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LKFYYNPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAA 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB8 EASEESLFSASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EASEESLFSASKNLNMPLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHA 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB8 ILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEPSAVPTRYPL 220 230 240 250 260 270 360 370 380 390 400 pF1KB8 VSVNEAPYRNMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VSVNEAPYRNMLPAGNPWLQMPTIADRSAAPHSRLALQPSPLDKYHPNYN 280 290 300 310 320 >>NP_689797 (OMIM: 400029,415000) heat shock transcripti (203 aa) initn: 1143 init1: 1125 opt: 1125 Z-score: 1162.1 bits: 222.9 E(85289): 5.5e-58 Smith-Waterman score: 1125; 98.9% identity (100.0% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 pF1KB8 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 MAHVSSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 SYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNF :::::::::::::::::::::::::::::::::::::::::::::::::::..: NP_689 APYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKIRFTKMKLS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 KRGYPQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALAAEASEESLFS NP_689 RSSTYENRYLCCNLHLKDESNYS 190 200 >>NP_001230023 (OMIM: 140581) heat shock factor protein (230 aa) initn: 176 init1: 92 opt: 169 Z-score: 183.1 bits: 42.0 E(85289): 0.0018 Smith-Waterman score: 211; 29.4% identity (62.0% similar) in 187 aa overlap (80-259:10-179) 50 60 70 80 90 100 pF1KB8 VLSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKS-ISWDENG-TCIVI : ::: .:: . . :.:..:: . .:. NP_001 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVL 10 20 30 110 120 130 140 150 160 pF1KB8 NEELFKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESS .:. : :::: : . :. . . :::::::.::: :. . . . ....:... NP_001 DEQRFAKEIL----P-KYFKHNNMASFVRQLNMYGFRKVVH------IDSGIVKQERDGP 40 50 60 70 80 170 180 190 200 210 220 pF1KB8 VLSKLKFYYNPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNK---KHFRAGANMEN : . .: ::.: .:: .::... .. . . .::..: . .. ..:. NP_001 VE-----FQHPYFKQGQDDLLENIKRKVSSSKPEE-NKIRQEDLTKIISSAQKVQIKQET 90 100 110 120 130 140 230 240 250 260 270 280 pF1KB8 HNSALAAEASE-ESLFSASKNLNMPLTRESSV-RQIIANSSVPIRSGFPPPSPSTSVGPS .: :. :: :::.. ..: .....: :.:. NP_001 IESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLL 150 160 170 180 190 200 290 300 310 320 330 340 pF1KB8 EQIATDQHAILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEP NP_001 NTNGAQKKNLFQHIVKEPTDNHHHKVIF 210 220 230 >>NP_001129036 (OMIM: 140581) heat shock factor protein (518 aa) initn: 182 init1: 92 opt: 169 Z-score: 177.8 bits: 42.1 E(85289): 0.0037 Smith-Waterman score: 211; 29.4% identity (62.0% similar) in 187 aa overlap (80-259:10-179) 50 60 70 80 90 100 pF1KB8 VLSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKS-ISWDENG-TCIVI : ::: .:: . . :.:..:: . .:. NP_001 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVL 10 20 30 110 120 130 140 150 160 pF1KB8 NEELFKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESS .:. : :::: : . :. . . :::::::.::: :. . . . ....:... NP_001 DEQRFAKEIL----P-KYFKHNNMASFVRQLNMYGFRKVVH------IDSGIVKQERDGP 40 50 60 70 80 170 180 190 200 210 220 pF1KB8 VLSKLKFYYNPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNK---KHFRAGANMEN : . .: ::.: .:: .::... .. . . .::..: . .. ..:. NP_001 VE-----FQHPYFKQGQDDLLENIKRKVSSSKPEE-NKIRQEDLTKIISSAQKVQIKQET 90 100 110 120 130 140 230 240 250 260 270 280 pF1KB8 HNSALAAEASE-ESLFSASKNLNMPLTRESSV-RQIIANSSVPIRSGFPPPSPSTSVGPS .: :. :: :::.. ..: .....: :.:. NP_001 IESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLL 150 160 170 180 190 200 290 300 310 320 330 340 pF1KB8 EQIATDQHAILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEP NP_001 NTNGAQKKNLFQHIVKEPTDNHHHKVPHSRTEGLKPRERISDDIIIYDVTDDNADEENIP 210 220 230 240 250 260 >>NP_004497 (OMIM: 140581) heat shock factor protein 2 i (536 aa) initn: 182 init1: 92 opt: 169 Z-score: 177.5 bits: 42.1 E(85289): 0.0038 Smith-Waterman score: 211; 29.4% identity (62.0% similar) in 187 aa overlap (80-259:10-179) 50 60 70 80 90 100 pF1KB8 VLSQGSLLESPSYTVCVSEPDKDDDFLSLNFPRKLWKIVESDQFKS-ISWDENG-TCIVI : ::: .:: . . :.:..:: . .:. NP_004 MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVL 10 20 30 110 120 130 140 150 160 pF1KB8 NEELFKKEILETKAPYRIFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESS .:. : :::: : . :. . . :::::::.::: :. . . . ....:... NP_004 DEQRFAKEIL----P-KYFKHNNMASFVRQLNMYGFRKVVH------IDSGIVKQERDGP 40 50 60 70 80 170 180 190 200 210 220 pF1KB8 VLSKLKFYYNPNFKRGYPQLLVRVKRRIGVKNASPISTLFNEDFNK---KHFRAGANMEN : . .: ::.: .:: .::... .. . . .::..: . .. ..:. NP_004 VE-----FQHPYFKQGQDDLLENIKRKVSSSKPEE-NKIRQEDLTKIISSAQKVQIKQET 90 100 110 120 130 140 230 240 250 260 270 280 pF1KB8 HNSALAAEASE-ESLFSASKNLNMPLTRESSV-RQIIANSSVPIRSGFPPPSPSTSVGPS .: :. :: :::.. ..: .....: :.:. NP_004 IESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLL 150 160 170 180 190 200 290 300 310 320 330 340 pF1KB8 EQIATDQHAILNQLTTIHMHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVEP NP_004 NTNGAQKKNLFQHIVKEPTDNHHHKVPHSRTEGLKPRERISDDIIIYDVTDDNADEENIP 210 220 230 240 250 260 401 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:54:22 2016 done: Fri Nov 4 16:54:24 2016 Total Scan time: 8.700 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]