FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8995, 412 aa
  1>>>pF1KB8995 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4362+/-0.00106; mu= -6.6946+/- 0.063
 mean_var=267.0217+/-53.855, 0's: 0 Z-trim(111.2): 35  B-trim: 18 in 1/50
 Lambda= 0.078488
 statistics sampled from 12200 (12221) to 12200 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.375), width:  16
 Scan time:  2.540

The best scores are:                                      opt bits E(32554)
CCDS31895.2 SELPLG gene_id:6404|Hs108|chr12        ( 412) 2613 309.1 4.8e-84
CCDS55881.1 SELPLG gene_id:6404|Hs108|chr12        ( 428) 2613 309.2   5e-84


>>CCDS31895.2 SELPLG gene_id:6404|Hs108|chr12             (412 aa)
 initn: 2613 init1: 2613 opt: 2613  Z-score: 1622.3  bits: 309.1 E(32554): 4.8e-84
Smith-Waterman score: 2613; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB8 MPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQATEYEYLDYDFLPETEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQATEYEYLDYDFLPETEPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANMGNLSTDSAAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANMGNLSTDSAAME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFIPFSVSSVTHKGIPMAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFIPFSVSSVTHKGIPMAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVRLSRKGHMYPVRNYSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVRLSRKGHMYPVRNYSPT
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB8 EMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDDLTLHSFLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDDLTLHSFLP
              370       380       390       400       410  

>>CCDS55881.1 SELPLG gene_id:6404|Hs108|chr12             (428 aa)
 initn: 2613 init1: 2613 opt: 2613  Z-score: 1622.1  bits: 309.2 E(32554): 5e-84
Smith-Waterman score: 2613; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:17-428)

                               10        20        30        40    
pF1KB8                 MPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQAT
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAVGASGLEGDKMAGAMPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQAT
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB8 EYEYLDYDFLPETEPPEMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EYEYLDYDFLPETEPPEMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTT
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB8 ELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTT
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB8 PLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTT
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB8 QTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFI
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB8 PFSVSSVTHKGIPMAASNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PFSVSSVTHKGIPMAASNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVR
              310       320       330       340       350       360

          350       360       370       380       390       400    
pF1KB8 LSRKGHMYPVRNYSPTEMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LSRKGHMYPVRNYSPTEMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDD
              370       380       390       400       410       420

          410  
pF1KB8 LTLHSFLP
       ::::::::
CCDS55 LTLHSFLP
               




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:50:51 2016 done: Sat Nov  5 00:50:51 2016
 Total Scan time:  2.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]