FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8995, 412 aa
  1>>>pF1KB8995 412 - 412 aa - 412 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.9580+/-0.000452; mu= -15.4224+/- 0.028
 mean_var=345.8031+/-71.340, 0's: 0 Z-trim(119.0): 14  B-trim: 91 in 1/55
 Lambda= 0.068970
 statistics sampled from 32631 (32644) to 32631 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.383), width:  16
 Scan time: 10.240

The best scores are:                                      opt bits E(85289)
NP_002997 (OMIM: 600738) P-selectin glycoprotein l ( 412) 2613 274.0 4.9e-73
NP_001193538 (OMIM: 600738) P-selectin glycoprotei ( 428) 2613 274.0 5.1e-73


>>NP_002997 (OMIM: 600738) P-selectin glycoprotein ligan  (412 aa)
 initn: 2613 init1: 2613 opt: 2613  Z-score: 1432.2  bits: 274.0 E(85289): 4.9e-73
Smith-Waterman score: 2613; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB8 MPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQATEYEYLDYDFLPETEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQATEYEYLDYDFLPETEPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANMGNLSTDSAAME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTTELANMGNLSTDSAAME
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTTPLAATEAQTTPPAATE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTTQTTAMEAQTTAPEATE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFIPFSVSSVTHKGIPMAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 AQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFIPFSVSSVTHKGIPMAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 SNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVRLSRKGHMYPVRNYSPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVRLSRKGHMYPVRNYSPT
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB8 EMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDDLTLHSFLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDDLTLHSFLP
              370       380       390       400       410  

>>NP_001193538 (OMIM: 600738) P-selectin glycoprotein li  (428 aa)
 initn: 2613 init1: 2613 opt: 2613  Z-score: 1432.0  bits: 274.0 E(85289): 5.1e-73
Smith-Waterman score: 2613; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:17-428)

                               10        20        30        40    
pF1KB8                 MPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQAT
                       ::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAVGASGLEGDKMAGAMPLQLLLLLILLGPGNSLQLWDTWADEAEKALGPLLARDRRQAT
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB8 EYEYLDYDFLPETEPPEMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYEYLDYDFLPETEPPEMLRNSTDTTPLTGPGTPESTTVEPAARRSTGLDAGGAVTELTT
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB8 ELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELANMGNLSTDSAAMEIQTTQPAATEAQTTQPVPTEAQTTPLAATEAQTTRLTATEAQTT
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB8 PLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLAATEAQTTPPAATEAQTTQPTGLEAQTTAPAAMEAQTTAPAAMEAQTTPPAAMEAQTT
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB8 QTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTTAMEAQTTAPEATEAQTTQPTATEAQTTPLAAMEALSTEPSATEALSMEPTTKRGLFI
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB8 PFSVSSVTHKGIPMAASNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFSVSSVTHKGIPMAASNLSVNYPVGAPDHISVKQCLLAILILALVATIFFVCTVVLAVR
              310       320       330       340       350       360

          350       360       370       380       390       400    
pF1KB8 LSRKGHMYPVRNYSPTEMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSRKGHMYPVRNYSPTEMVCISSLLPDGGEGPSATANGGLSKAKSPGLTPEPREDREGDD
              370       380       390       400       410       420

          410  
pF1KB8 LTLHSFLP
       ::::::::
NP_001 LTLHSFLP
               




412 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:50:51 2016 done: Sat Nov  5 00:50:53 2016
 Total Scan time: 10.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]