FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9016, 261 aa 1>>>pF1KB9016 261 - 261 aa - 261 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.3252+/-0.000444; mu= -8.4903+/- 0.028 mean_var=564.3204+/-118.851, 0's: 0 Z-trim(124.7): 6 B-trim: 855 in 1/60 Lambda= 0.053990 statistics sampled from 46763 (46777) to 46763 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.548), width: 16 Scan time: 8.080 The best scores are: opt bits E(85289) NP_036610 (OMIM: 606962) WW domain-binding protein ( 261) 1859 158.3 1.3e-38 NP_001317428 (OMIM: 606962) WW domain-binding prot ( 216) 971 89.0 7.6e-18 NP_689826 (OMIM: 610981) postacrosomal sheath WW d ( 309) 495 52.2 1.4e-06 >>NP_036610 (OMIM: 606962) WW domain-binding protein 2 i (261 aa) initn: 1859 init1: 1859 opt: 1859 Z-score: 814.3 bits: 158.3 E(85289): 1.3e-38 Smith-Waterman score: 1859; 100.0% identity (100.0% similar) in 261 aa overlap (1-261:1-261) 10 20 30 40 50 60 pF1KB9 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 EFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYPPPVANGMYPCPPGYPYPPPPPEFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 EFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYPPPVANGMYPCPPGYPYPPPPPEFY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV 190 200 210 220 230 240 250 260 pF1KB9 YMPTSQPPPPPYYPPEDKKTQ ::::::::::::::::::::: NP_036 YMPTSQPPPPPYYPPEDKKTQ 250 260 >>NP_001317428 (OMIM: 606962) WW domain-binding protein (216 aa) initn: 1066 init1: 883 opt: 971 Z-score: 441.4 bits: 89.0 E(85289): 7.6e-18 Smith-Waterman score: 1405; 82.8% identity (82.8% similar) in 261 aa overlap (1-261:1-216) 10 20 30 40 50 60 pF1KB9 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MALNKNHSEGGGVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIFL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SKGKDAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAGGAI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 EFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYPPPVANGMYPCPPGYPYPPPPPEFY :::::::::::: ::: NP_001 EFGQRMLQVASQ---------------------------------------------EFY 130 190 200 210 220 230 240 pF1KB9 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PGPPMMDGAMGYVQPPPPPYPGPMEPPVSGPDVPSTPAAEAKAAEAAASAYYNPGNPHNV 140 150 160 170 180 190 250 260 pF1KB9 YMPTSQPPPPPYYPPEDKKTQ ::::::::::::::::::::: NP_001 YMPTSQPPPPPYYPPEDKKTQ 200 210 >>NP_689826 (OMIM: 610981) postacrosomal sheath WW domai (309 aa) initn: 436 init1: 293 opt: 495 Z-score: 239.3 bits: 52.2 E(85289): 1.4e-06 Smith-Waterman score: 509; 37.9% identity (59.2% similar) in 277 aa overlap (1-253:1-273) 10 20 30 40 50 pF1KB9 MALNKNHSEGG-GVIVNNTESILMSYDHVELTFNDMKNVPEAFKGTKKGTVYLTPYRVIF ::.:..:.:. :... : ::.: .:::.: . .. ..:.: : ::..:: ::::: NP_689 MAVNQSHTENRRGALIPNGESLLKRSPNVELSFPQRSEGSNVFSGRKTGTLFLTSYRVIF 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB9 LSKGK--DAMQSFMMPFYLMKDCEIKQPVFGANYIKGTVKAEAGGGWEGSASYKLTFTAG ... . : : :::::: :: . ..::::.::.::::..: :::::.:..::.: : NP_689 ITSCSISDPMLSFMMPFDLMTNLTVEQPVFAANFIKGTIQAAPYGGWEGQATFKLVFRNG 70 80 90 100 110 120 120 130 140 150 160 pF1KB9 GAIEFGQRMLQVASQASRGEVPSGAYGYSYMPSGAYVYP-------P--PVANGMYPCPP ::::.: :...:: :.:: : . . . : :: : : . .: :: NP_689 DAIEFAQLMVKAASAAARG-FPLRTLNDWFSSMGIYVITGEGNMCTPQMPCSVIVYGAPP 130 140 150 160 170 170 180 190 200 210 220 pF1KB9 -GYPYPPPPPEFYPGPPMMDGA--MGYVQPPPPPYPGPME---PPVSGPDVPSTPAAEAK :: ::: : .:: :: .: :: .:.. ::.. :. .: NP_689 AGYGAPPPG---YGAPPAGYGAQPVGNEGPPVGYRASPVRYGAPPLGYGAPPAGYGAPPL 180 190 200 210 220 230 230 240 250 260 pF1KB9 AAEAAASAYYNP----GNPHNVYM--PTSQPPPPPYYPPEDKKTQ . : .: .: : : : :... :: : NP_689 GYGAPPLGYGTPPLGYGAPPLGYGAPPAGNEGPPAGYRASPAGSGARPQESTAAQAPENE 240 250 260 270 280 290 NP_689 ASLPSASSSQVHS 300 261 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 16:58:32 2016 done: Fri Nov 4 16:58:33 2016 Total Scan time: 8.080 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]