FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9017, 443 aa
  1>>>pF1KB9017 443 - 443 aa - 443 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3084+/-0.000808; mu= 13.3582+/- 0.049
 mean_var=94.2412+/-19.931, 0's: 0 Z-trim(109.6): 9  B-trim: 138 in 1/51
 Lambda= 0.132116
 statistics sampled from 10975 (10984) to 10975 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.337), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS11319.1 TADA2A gene_id:6871|Hs108|chr17        ( 443) 3023 586.3  2e-167
CCDS45656.1 TADA2A gene_id:6871|Hs108|chr17        ( 305) 1926 377.1 1.3e-104
CCDS47007.1 TADA2B gene_id:93624|Hs108|chr4        ( 420)  512 107.7 2.3e-23


>>CCDS11319.1 TADA2A gene_id:6871|Hs108|chr17             (443 aa)
 initn: 3023 init1: 3023 opt: 3023  Z-score: 3119.1  bits: 586.3 E(32554): 2e-167
Smith-Waterman score: 3023; 100.0% identity (100.0% similar) in 443 aa overlap (1-443:1-443)

               10        20        30        40        50        60
pF1KB9 MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 YEIMTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YEIMTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFIN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NPLFASTLLNLKQAEEAKTADTAIPFHSTDDPPRPTFDSLLSRDMAGYMPARADFIEEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NPLFASTLLNLKQAEEAKTADTAIPFHSTDDPPRPTFDSLLSRDMAGYMPARADFIEEFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLME
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRREIKRLQEYRTAGITNFCSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRREIKRLQEYRTAGITNFCSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADIDSGLSPSIPMASNSGRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADIDSGLSPSIPMASNSGRR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 SAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALLNECNKQGGLRLAQARALI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALLNECNKQGGLRLAQARALI
              370       380       390       400       410       420

              430       440   
pF1KB9 KIDVNKTRKIYDFLIREGYITKG
       :::::::::::::::::::::::
CCDS11 KIDVNKTRKIYDFLIREGYITKG
              430       440   

>>CCDS45656.1 TADA2A gene_id:6871|Hs108|chr17             (305 aa)
 initn: 1926 init1: 1926 opt: 1926  Z-score: 1991.5  bits: 377.1 E(32554): 1.3e-104
Smith-Waterman score: 1926; 97.9% identity (98.6% similar) in 282 aa overlap (1-282:1-282)

               10        20        30        40        50        60
pF1KB9 MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 YEIMTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YEIMTSDFPVLDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKHFIN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 NPLFASTLLNLKQAEEAKTADTAIPFHSTDDPPRPTFDSLLSRDMAGYMPARADFIEEFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NPLFASTLLNLKQAEEAKTADTAIPFHSTDDPPRPTFDSLLSRDMAGYMPARADFIEEFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLINLRKFQLME
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRREIKRLQEYRTAGITNFCSA
       :::::::::::::::::::::::::::::::::: .. :  :                  
CCDS45 RRYPKEVQDLYETMRRFARIVGPVEHDKFIESHACRWFLSLEQYLCVYIYINRRDNGVFY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADIDSGLSPSIPMASNSGRR
                                                                   
CCDS45 VKFYK                                                       
                                                                   

>>CCDS47007.1 TADA2B gene_id:93624|Hs108|chr4             (420 aa)
 initn: 571 init1: 189 opt: 512  Z-score: 532.9  bits: 107.7 E(32554): 2.3e-23
Smith-Waterman score: 557; 27.9% identity (57.1% similar) in 445 aa overlap (14-442:6-417)

               10        20        30        40        50        60
pF1KB9 MDRLGSFSNDPSDKPPCRGCSSYLMEPYIKCAECGPPPFFLCLQCFTRGFEYKKHQSDHT
                    :  :  : . .    ..:.::    . :: .::. : :  .:.  : 
CCDS47         MAELGKKYCVYCLAEVSPLRFRCTEC--QDIELCPECFSAGAEIGHHRRYHG
                       10        20          30        40        50

                70            80        90       100        110    
pF1KB9 YEIMTSD-FPVLDP----SWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHY
       :... .  : .  :    .::..::. ::.:. . :::::.:.: ..  ..: .:  .::
CCDS47 YQLVDGGRFTLWGPEAEGGWTSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHY
               60        70        80        90       100       110

          120       130        140       150        160       170  
pF1KB9 MKHFINNPLFASTLLN-LKQAEEAKTADTAIPFHSTDDPPRPTFD-SLLSRDMAGYMPAR
       .. .:.. :  . . . . .    .:  .. :.  .   : : .: :.  ... :::: :
CCDS47 VSMYIHGNLGKACIPDTIPNRVTDHTCPSGGPLSPSLTTPLPPLDISVAEQQQLGYMPLR
              120       130       140       150       160       170

            180       190       200       210       220       230  
pF1KB9 ADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRKKIIRDHGLI-
        :.  :.:. ::  .  ..   ::.:.   :: : ::.:  .::::::::.: ::..:. 
CCDS47 DDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIARDYNLVP
              180       190       200       210       220       230

                   240       250       260       270       280     
pF1KB9 ------NLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRREIKR
             . .: . ..:.  :: ..:   .: . ....  : : ..:.   :  :: .:..
CCDS47 AFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKMLRAKIRE
              240       250       260       270       280       290

         290       300       310       320       330       340     
pF1KB9 LQEYRTAGITNFCSARTYDHLKKTREEERLKRTMLSEVLQYIQDSSACQQWLRRQADIDS
       ::.::  :::..  .  :.  .. ::... ....            : ..  : . :   
CCDS47 LQRYRRNGITKMEESAEYEAARHKREKRKENKNL------------AGSK--RGKED---
              300       310       320                     330      

         350       360       370       380       390       400     
pF1KB9 GLSPSIPMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAYLEYKSALLNE-
                   :. :     . .::: : :...:: ::. . : :. :.  :. .... 
CCDS47 ------------GKDSEFA-AIENLPGFELLSDREKVLCSSLNLSPARYVTVKTIIIKDH
                       340        350       360       370       380

          410       420       430       440     
pF1KB9 CNKQGGLRLAQARALIKIDVNKTRKIYDFLIREGYITKG  
        .:. :.  ...:    .:    ..: .:: . :.:..   
CCDS47 LQKRQGIP-SKSRLPSYLDKVLKKRILNFLTESGWISRDAS
               390       400       410       420




443 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:17:07 2016 done: Thu Nov  3 18:17:07 2016
 Total Scan time:  2.890 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]