(Circular) (Six-base) MAPSORT of: pF1KB9098.seq Check: 488 from: 1 to: 6884 pF1KB9098 6884 bp With 182 enzymes: SgfI * June 20, 2008 10:30 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 551 551 Size: 6884 AatII G_ACGT'C Cuts at: 965 965 Size: 6884 AccI GT'mk_AC Cuts at: 3922 3922 Size: 6884 Acc65I G'GTAC_C Cuts at: 3900 3900 Size: 6884 AclI AA'CG_TT Cuts at: 6724 6724 Size: 6884 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 387 649 1048 1207 1959 2418 2522 2663 3158 Size: 262 399 159 752 459 104 141 495 Cuts at: 3158 3326 4709 5141 5494 6156 387 Size: 168 1383 432 353 662 1115 Fragments arranged by size: 1383 1115 752 662 495 459 432 399 353 262 168 159 141 104 AfeI AGC'GCT Cuts at: 2543 2543 Size: 6884 AflIII A'CryG_T Cuts at: 4236 6036 6317 4236 Size: 1800 281 4803 Fragments arranged by size: 4803 1800 281 AhdI GACnn_n'nnGTC Cuts at: 2726 2726 Size: 6884 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2020 2020 Size: 6884 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3854 3886 3854 Size: 32 6852 AlwNI CAG_nnn'CTG Cuts at: 255 882 1146 4189 5627 255 Size: 627 264 3043 1438 1512 Fragments arranged by size: 3043 1512 1438 627 264 ApaLI G'TGCA_C Cuts at: 5722 5722 Size: 6884 ApoI r'AATT_y Cuts at: 1902 2673 3888 6237 6493 1902 Size: 771 1215 2349 256 2293 Fragments arranged by size: 2349 2293 1215 771 256 AseI AT'TA_AT Cuts at: 20 523 20 Size: 503 6381 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6884 AvaI C'yCGr_G Cuts at: 279 294 3904 279 Size: 15 3610 3259 Fragments arranged by size: 3610 3259 15 BamHI G'GATC_C Cuts at: 119 1720 3909 119 Size: 1601 2189 3094 Fragments arranged by size: 3094 2189 1601 BanI G'GyrC_C Cuts at: 1503 1538 2806 3900 4314 4562 4597 1503 Size: 35 1268 1094 414 248 35 3790 Fragments arranged by size: 3790 1268 1094 414 248 35 35 BanII G_rGCy'C Cuts at: 286 1292 1880 2195 2560 2984 3035 3158 3898 Size: 1006 588 315 365 424 51 123 740 Cuts at: 3898 4928 286 Size: 1030 2242 Fragments arranged by size: 2242 1030 1006 740 588 424 365 315 123 51 BbeI G_GCGC'C Cuts at: 1542 4318 4566 1542 Size: 2776 248 3860 Fragments arranged by size: 3860 2776 248 BbsI GAAGACnn'nnnn_ Cuts at: 574 710 781 2100 2537 3210 3692 3839 574 Size: 136 71 1319 437 673 482 147 3619 Fragments arranged by size: 3619 1319 673 482 437 147 136 71 BbvCI CC'TCA_GC Cuts at: 433 860 2383 433 Size: 427 1523 4934 Fragments arranged by size: 4934 1523 427 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 90 124 1419 1453 2979 3013 90 Size: 34 1295 34 1526 34 3961 Fragments arranged by size: 3961 1526 1295 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4782 5838 6884 4782 Size: 1056 1046 4782 Fragments arranged by size: 4782 1056 1046 BclI T'GATC_A Cuts at: 1433 1928 2592 4404 1433 Size: 495 664 1812 3913 Fragments arranged by size: 3913 1812 664 495 BglI GCCn_nnn'nGGC Cuts at: 297 2761 297 Size: 2464 4420 BglII A'GATC_T Cuts at: 1010 4399 6436 1010 Size: 3389 2037 1458 Fragments arranged by size: 3389 2037 1458 BlpI GC'TnA_GC Cuts at: 2545 3152 3996 2545 Size: 607 844 5433 Fragments arranged by size: 5433 844 607 Bme1580I G_kGCm'C Cuts at: 1508 2809 4509 4602 5726 1508 Size: 1301 1700 93 1124 2666 Fragments arranged by size: 2666 1700 1301 1124 93 BmgBI CAC'GTC Cuts at: 141 3500 141 Size: 3359 3525 BmrI ACTGGGnnnn_n' Cuts at: 2949 4096 4177 4512 6656 2949 Size: 1147 81 335 2144 3177 Fragments arranged by size: 3177 2144 1147 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 294 3474 5251 294 Size: 3180 1777 1927 Fragments arranged by size: 3180 1927 1777 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 331 394 874 1026 1249 1375 1646 2059 2209 Size: 63 480 152 223 126 271 413 150 Cuts at: 2209 3136 3199 3469 331 Size: 927 63 270 3746 Fragments arranged by size: 3746 927 480 413 271 270 223 152 150 126 63 63 Bpu10I CC'TnA_GC Cuts at: 193 433 860 2065 2383 2841 193 Size: 240 427 1205 318 458 4236 Fragments arranged by size: 4236 1205 458 427 318 240 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 637 4060 4939 5653 5951 637 Size: 3423 879 714 298 1570 Fragments arranged by size: 3423 1570 879 714 298 BsaI GGTCTCn'nnnn_ Cuts at: 1225 1553 2962 6588 1225 Size: 328 1409 3626 1521 Fragments arranged by size: 3626 1521 1409 328 BsaAI yAC'GTr Cuts at: 873 4237 873 Size: 3364 3520 BsaBI GATnn'nnATC Cuts at: 6 616 2591 4398 6435 6 Size: 610 1975 1807 2037 455 Fragments arranged by size: 2037 1975 1807 610 455 BsaHI Gr'CG_yC Cuts at: 962 1539 1940 3670 4315 4563 5265 6761 962 Size: 577 401 1730 645 248 702 1496 1085 Fragments arranged by size: 1730 1496 1085 702 645 577 401 248 BsaWI w'CCGG_w Cuts at: 797 1406 2828 4073 4594 5272 5683 5830 6104 Size: 609 1422 1245 521 678 411 147 274 Cuts at: 6104 797 Size: 1577 Fragments arranged by size: 1577 1422 1245 678 609 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1348 1378 2182 2212 2625 2655 3854 3884 1348 Size: 30 804 30 413 30 1199 30 4348 Fragments arranged by size: 4348 1199 804 413 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1231 1372 1702 1720 2262 2593 3133 3253 3676 Size: 141 330 18 542 331 540 120 423 Cuts at: 3676 1231 Size: 4439 Fragments arranged by size: 4439 542 540 423 331 330 141 120 18 BseYI C'CCAG_C Cuts at: 4309 5067 5732 6140 4309 Size: 758 665 408 5053 Fragments arranged by size: 5053 758 665 408 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 523 754 868 895 1659 2077 2870 523 Size: 231 114 27 764 418 793 4537 Fragments arranged by size: 4537 793 764 418 231 114 27 BsiEI CG_ry'CG Cuts at: 104 330 2765 4426 4472 5702 104 Size: 226 2435 1661 46 1230 1286 Fragments arranged by size: 2435 1661 1286 1230 226 46 BsiHKAI G_wGCw'C Cuts at: 286 1292 1316 2195 2560 2933 2984 3035 3779 Size: 1006 24 879 365 373 51 51 744 Cuts at: 3779 3898 4676 4866 5726 286 Size: 119 778 190 860 1444 Fragments arranged by size: 1444 1006 879 860 778 744 373 365 190 119 51 51 24 BsmBI CGTCTCn'nnnn_ Cuts at: 1387 1387 Size: 6884 Bsp1286I G_dGCh'C Cuts at: 286 1292 1316 1508 1880 2195 2560 2809 2933 Size: 1006 24 192 372 315 365 249 124 Cuts at: 2933 2984 3035 3158 3779 3898 4509 4602 4676 Size: 51 51 123 621 119 611 93 74 Cuts at: 4676 4866 4928 5726 286 Size: 190 62 798 1444 Fragments arranged by size: 1444 1006 798 621 611 372 365 315 249 192 190 124 123 119 93 74 62 51 51 24 BspEI T'CCGG_A Cuts at: 1406 1406 Size: 6884 BspHI T'CATG_A Cuts at: 1308 1880 2717 3296 5316 1308 Size: 572 837 579 2020 2876 Fragments arranged by size: 2876 2020 837 579 572 BspMI ACCTGCnnnn'nnnn_ Cuts at: 263 314 545 551 2063 3934 4148 4450 4831 Size: 51 231 6 1512 1871 214 302 381 Cuts at: 4831 263 Size: 2316 Fragments arranged by size: 2316 1871 1512 381 302 231 214 51 6 BsrBI CCG'CTC Cuts at: 50 624 2031 3048 5176 5230 6714 6879 50 Size: 574 1407 1017 2128 54 1484 165 55 Fragments arranged by size: 2128 1484 1407 1017 574 165 55 54 BsrDI GCAATG_nn' Cuts at: 476 1878 3363 4796 476 Size: 1402 1485 1433 2564 Fragments arranged by size: 2564 1485 1433 1402 BsrFI r'CCGG_y Cuts at: 348 761 2318 4882 5063 348 Size: 413 1557 2564 181 2169 Fragments arranged by size: 2564 2169 1557 413 181 BssHII G'CGCG_C Cuts at: 163 332 2253 163 Size: 169 1921 4794 Fragments arranged by size: 4794 1921 169 BssSI C'ACGA_G Cuts at: 5155 5863 5155 Size: 708 6176 BstAPI GCAn_nnn'nTGC Cuts at: 255 478 546 882 4261 255 Size: 223 68 336 3379 2878 Fragments arranged by size: 3379 2878 336 223 68 BstBI TT'CG_AA Cuts at: 5245 5245 Size: 6884 BstEII G'GTnAC_C Cuts at: 800 800 Size: 6884 BstXI CCAn_nnnn'nTGG Cuts at: 2187 2875 2187 Size: 688 6196 BstYI r'GATC_y Cuts at: 1 119 1010 1142 1259 1451 1720 2009 3909 Size: 118 891 132 117 192 269 289 1900 Cuts at: 3909 4376 4399 4734 4980 5286 5298 5384 6436 Size: 467 23 335 246 306 12 86 1052 Cuts at: 6436 1 Size: 449 Fragments arranged by size: 1900 1052 891 467 449 335 306 289 269 246 192 132 118 117 86 23 12 BtgI C'CryG_G Cuts at: 572 572 Size: 6884 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4834 5015 5178 4834 Size: 181 163 6540 Fragments arranged by size: 6540 181 163 BtsI GCAGTG_nn' Cuts at: 1152 2757 3480 4127 1152 Size: 1605 723 647 3909 Fragments arranged by size: 3909 1605 723 647 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 214 249 214 Size: 35 6849 DraI TTT'AAA Cuts at: 1752 3883 1752 Size: 2131 4753 DraIII CAC_nnn'GTG Cuts at: 2943 3616 2943 Size: 673 6211 DrdI GACnn_nn'nnGTC Cuts at: 3694 4590 5934 3694 Size: 896 1344 4644 Fragments arranged by size: 4644 1344 896 EaeI y'GGCC_r Cuts at: 135 359 575 923 1418 1725 2208 2375 2420 Size: 224 216 348 495 307 483 167 45 Cuts at: 2420 2762 3401 4469 4643 5034 5061 6406 135 Size: 342 639 1068 174 391 27 1345 613 Fragments arranged by size: 1345 1068 639 613 495 483 391 348 342 307 224 216 174 167 45 27 EagI C'GGCC_G Cuts at: 2762 4469 2762 Size: 1707 5177 EarI CTCTTCn'nnn_ Cuts at: 265 4907 5117 265 Size: 4642 210 2032 Fragments arranged by size: 4642 2032 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 780 2337 2923 5092 5834 5980 6694 780 Size: 1557 586 2169 742 146 714 970 Fragments arranged by size: 2169 1557 970 742 714 586 146 EcoICRI GAG'CTC Cuts at: 284 1290 2193 2558 2982 3033 3896 284 Size: 1006 903 365 424 51 863 3272 Fragments arranged by size: 3272 1006 903 863 424 365 51 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 331 387 394 649 874 1026 1048 1207 1249 Size: 56 7 255 225 152 22 159 42 Cuts at: 1249 1375 1646 1959 2059 2209 2418 2522 2663 Size: 126 271 313 100 150 209 104 141 Cuts at: 2663 3136 3158 3199 3326 3469 4709 5141 5494 Size: 473 22 41 127 143 1240 432 353 Cuts at: 5494 6156 331 Size: 662 1059 Fragments arranged by size: 1240 1059 662 473 432 353 313 271 255 225 209 159 152 150 143 141 127 126 104 100 56 42 41 22 22 7 EcoNI CCTnn'n_nnAGG Cuts at: 310 652 1498 3040 310 Size: 342 846 1542 4154 Fragments arranged by size: 4154 1542 846 342 EcoO109I rG'GnC_Cy Cuts at: 497 2364 3090 3284 4023 497 Size: 1867 726 194 739 3358 Fragments arranged by size: 3358 1867 739 726 194 EcoRI G'AATT_C Cuts at: 3888 3888 Size: 6884 EcoRV GAT'ATC Cuts at: 3722 3722 Size: 6884 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 1656 3305 4903 1656 Size: 1649 1598 3637 Fragments arranged by size: 3637 1649 1598 FspI TGC'GCA Cuts at: 823 4665 823 Size: 3842 3042 HaeII r_GCGC'y Cuts at: 355 1542 2545 3386 4318 4566 5796 6567 355 Size: 1187 1003 841 932 248 1230 771 672 Fragments arranged by size: 1230 1187 1003 932 841 771 672 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 268 300 628 660 1348 1380 2712 2744 4726 Size: 32 328 32 688 32 1332 32 1982 Cuts at: 4726 4756 4758 4788 268 Size: 30 2 30 2364 Fragments arranged by size: 2364 1982 1332 688 328 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 897 1965 3699 3923 897 Size: 1068 1734 224 3858 Fragments arranged by size: 3858 1734 1068 224 HindIII A'AGCT_T Cuts at: 1633 3527 3550 1633 Size: 1894 23 4967 Fragments arranged by size: 4967 1894 23 KasI G'GCGC_C Cuts at: 1538 4314 4562 1538 Size: 2776 248 3860 Fragments arranged by size: 3860 2776 248 KpnI G_GTAC'C Cuts at: 3904 3904 Size: 6884 MluI A'CGCG_T Cuts at: 6317 6317 Size: 6884 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1961 2668 5643 5827 1961 Size: 707 2975 184 3018 Fragments arranged by size: 3018 2975 707 184 MscI TGG'CCA Cuts at: 137 577 1420 2210 4645 137 Size: 440 843 790 2435 2376 Fragments arranged by size: 2435 2376 843 790 440 MslI CAynn'nnrTG Cuts at: 1501 1798 2410 3130 3317 4873 5000 1501 Size: 297 612 720 187 1556 127 3385 Fragments arranged by size: 3385 1556 720 612 297 187 127 MspA1I CmG'CkG Cuts at: 372 882 915 1046 2387 3195 3422 3995 4309 Size: 510 33 131 1341 808 227 573 314 Cuts at: 4309 4669 5453 5698 372 Size: 360 784 245 1558 Fragments arranged by size: 1558 1341 808 784 573 510 360 314 245 227 131 33 NaeI GCC'GGC Cuts at: 350 763 2320 5065 350 Size: 413 1557 2745 2169 Fragments arranged by size: 2745 2169 1557 413 NarI GG'CG_CC Cuts at: 1539 4315 4563 1539 Size: 2776 248 3860 Fragments arranged by size: 3860 2776 248 NdeI CA'TA_TG Cuts at: 3415 3415 Size: 6884 NgoMIV G'CCGG_C Cuts at: 348 761 2318 5063 348 Size: 413 1557 2745 2169 Fragments arranged by size: 2745 2169 1557 413 NspI r_CATG'y Cuts at: 487 822 852 2415 3937 4437 6040 487 Size: 335 30 1563 1522 500 1603 1331 Fragments arranged by size: 1603 1563 1522 1331 500 335 30 PasI CC'CwG_GG Cuts at: 150 150 Size: 6884 PciI A'CATG_T Cuts at: 6036 6036 Size: 6884 PflMI CCAn_nnn'nTGG Cuts at: 1854 1854 Size: 6884 PfoI T'CCnGG_A Cuts at: 785 1457 2129 3005 785 Size: 672 672 876 4664 Fragments arranged by size: 4664 876 672 672 PmeI GTTT'AAAC Cuts at: 3883 3883 Size: 6884 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1473 1505 3854 3886 5330 5362 1473 Size: 32 2349 32 1444 32 2995 Fragments arranged by size: 2995 2349 1444 32 32 32 PpuMI rG'GwC_Cy Cuts at: 497 3090 3284 497 Size: 2593 194 4097 Fragments arranged by size: 4097 2593 194 PspXI vC'TCGA_Gb Cuts at: 279 279 Size: 6884 PstI C_TGCA'G Cuts at: 251 551 1142 2009 3060 3931 4616 251 Size: 300 591 867 1051 871 685 2519 Fragments arranged by size: 2519 1051 871 867 685 591 300 PvuI CG_AT'CG Cuts at: 104 104 Size: 6884 PvuII CAG'CTG Cuts at: 882 1046 2387 3195 4309 4669 882 Size: 164 1341 808 1114 360 3097 Fragments arranged by size: 3097 1341 1114 808 360 164 RsrII CG'GwC_CG Cuts at: 5079 5079 Size: 6884 SacI G_AGCT'C Cuts at: 286 1292 2195 2560 2984 3035 3898 286 Size: 1006 903 365 424 51 863 3272 Fragments arranged by size: 3272 1006 903 863 424 365 51 SalI G'TCGA_C Cuts at: 3921 3921 Size: 6884 SapI GCTCTTCn'nnn_ Cuts at: 265 4907 5117 265 Size: 4642 210 2032 Fragments arranged by size: 4642 2032 210 SbfI CC_TGCA'GG Cuts at: 3931 3931 Size: 6884 ScaI AGT'ACT Cuts at: 6401 6401 Size: 6884 SexAI A'CCwGG_T Cuts at: 833 833 Size: 6884 SfcI C'TryA_G Cuts at: 33 247 492 547 1138 2005 3056 3927 4612 Size: 214 245 55 591 867 1051 871 685 Cuts at: 4612 5580 5771 33 Size: 968 191 1146 Fragments arranged by size: 1146 1051 968 871 867 685 591 245 214 191 55 SfoI GGC'GCC Cuts at: 1540 4316 4564 1540 Size: 2776 248 3860 Fragments arranged by size: 3860 2776 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6884 SgrAI Cr'CCGG_yG Cuts at: 2318 2318 Size: 6884 SmaI CCC'GGG Cuts at: 3906 3906 Size: 6884 SmlI C'TyrA_G Cuts at: 279 652 4039 4954 5668 5930 279 Size: 373 3387 915 714 262 1233 Fragments arranged by size: 3387 1233 915 714 373 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6884 SphI G_CATG'C Cuts at: 822 852 3937 4437 822 Size: 30 3085 500 3269 Fragments arranged by size: 3269 3085 500 30 SspI AAT'ATT Cuts at: 3799 3799 Size: 6884 StuI AGG'CCT Cuts at: 1025 1025 Size: 6884 StyI C'CwwG_G Cuts at: 362 425 1020 1907 4018 4372 362 Size: 63 595 887 2111 354 2874 Fragments arranged by size: 2874 2111 887 595 354 63 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 456 694 2667 2931 3387 4467 4600 5059 5268 Size: 238 1973 264 456 1080 133 459 209 Cuts at: 5268 456 Size: 2072 Fragments arranged by size: 2072 1973 1080 459 456 264 238 209 133 TatI w'GTAC_w Cuts at: 1130 2414 6399 1130 Size: 1284 3985 1615 Fragments arranged by size: 3985 1615 1284 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 130 162 2929 2961 3602 3634 6401 6433 130 Size: 32 2767 32 641 32 2767 32 581 Fragments arranged by size: 2767 2767 641 581 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 961 2304 4681 961 Size: 1343 2377 3164 Fragments arranged by size: 3164 2377 1343 XbaI T'CTAG_A Cuts at: 3915 3915 Size: 6884 XcmI CCAnnnn_n'nnnnTGG Cuts at: 369 1059 1350 1539 2121 2127 2608 4379 369 Size: 690 291 189 582 6 481 1771 2874 Fragments arranged by size: 2874 1771 690 582 481 291 189 6 XhoI C'TCGA_G Cuts at: 279 279 Size: 6884 XmaI C'CCGG_G Cuts at: 3904 3904 Size: 6884 ZraI GAC'GTC Cuts at: 963 963 Size: 6884 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflIII AhdI AlfI AloI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI EcoRV FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NdeI NgoMIV NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PspXI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI ZraI Enzymes that do not cut: AflII AgeI AleI ApaI AscI AvrII BaeI BfrBI BmtI BsiWI BsmI BsrGI BstZ17I Bsu36I ClaI FseI FspAI HpaI MfeI NcoI NheI NotI NruI NsiI PacI PmlI PshAI PsiI PspOMI PsrI SacII SanDI SfiI SnaBI SrfI SwaI XmnI