FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9123, 505 aa
  1>>>pF1KB9123 505 - 505 aa - 505 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.3348+/-0.0013; mu= -23.0245+/- 0.079
 mean_var=838.4342+/-171.504, 0's: 0 Z-trim(117.6): 105  B-trim: 62 in 1/55
 Lambda= 0.044293
 statistics sampled from 18293 (18383) to 18293 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.565), width:  16
 Scan time:  4.060

The best scores are:                                      opt bits E(32554)
CCDS34743.1 WASL gene_id:8976|Hs108|chr7           ( 505) 3600 245.0 1.4e-64
CCDS14303.1 WAS gene_id:7454|Hs108|chrX            ( 502)  863 70.1 6.4e-12


>>CCDS34743.1 WASL gene_id:8976|Hs108|chr7                (505 aa)
 initn: 3600 init1: 3600 opt: 3600  Z-score: 1272.7  bits: 245.0 E(32554): 1.4e-64
Smith-Waterman score: 3600; 100.0% identity (100.0% similar) in 505 aa overlap (1-505:1-505)

               10        20        30        40        50        60
pF1KB9 MSSVQQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSSVQQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 CSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVALN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 FANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FANEEEAKKFRKAVTDLLGRRQRKSEKRRDPPNGPNLPMATVDIKNPEITTNRFYGPQVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 NISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NISHTKEKKKGKAKKKRLTKADIGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 ISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ISEAQLKDRETSKVIYDFIEKTGGVEAVKNELRRQAPPPPPPSRGGPPPPPPPPHNSGPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 PPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 PPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 KVEQNSRPVSCSGRDALLDQIRQGIQLKSVADGQESTPPTPAPTSGIVGALMEVMQKRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KVEQNSRPVSCSGRDALLDQIRQGIQLKSVADGQESTPPTPAPTSGIVGALMEVMQKRSK
              430       440       450       460       470       480

              490       500     
pF1KB9 AIHSSDEDEDEDDEEDFEDDDEWED
       :::::::::::::::::::::::::
CCDS34 AIHSSDEDEDEDDEEDFEDDDEWED
              490       500     

>>CCDS14303.1 WAS gene_id:7454|Hs108|chrX                 (502 aa)
 initn: 1526 init1: 606 opt: 863  Z-score: 327.5  bits: 70.1 E(32554): 6.4e-12
Smith-Waterman score: 1574; 48.7% identity (66.8% similar) in 536 aa overlap (11-505:16-502)

                    10        20        30        40        50     
pF1KB9      MSSVQQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAA--DR
                      :    :. : ::  .::. :: .::.::.:...:::::: :    
CCDS14 MSGGPMGGRPGGRGAPAVQQNIPSTLLQDHENQRLFEMLGRKCLTLATAVVQLYLALPPG
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KB9 NCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD
          :.:.  :..:.::::::.:::.:.. .. :.::::::::...::..:  .:::::::
CCDS14 AEHWTKEHCGAVCFVKDNPQKSYFIRLYGLQAGRLLWEQELYSQLVYSTPTPFFHTFAGD
               70        80        90       100       110       120

           120       130       140        150                      
pF1KB9 TCQVALNFANEEEAKKFRKAVTDLLGRR-QRKSEKRRD----------------------
        ::..::::.:.::. ::  : . . .: ::.:  ::.                      
CCDS14 DCQAGLNFADEDEAQAFRALVQEKIQKRNQRQSGDRRQLPPPPTPANEERRGGLPPLPLH
              130       140       150       160       170       180

                      160       170       180       190       200  
pF1KB9 -------PPNGP-NLPMATVDIKNPEITTNRFYGPQVNNISHTKEKKKGKAKKKRLTKAD
              :: :: .: .:::::.::.::..:. :  . . : . .:..::   :...:::
CCDS14 PGGDQGGPPVGPLSLGLATVDIQNPDITSSRYRGLPAPGPSPADKKRSGK---KKISKAD
              190       200       210       220       230          

            210       220       230       240       250       260  
pF1KB9 IGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKT
       ::.::.:.:..::::::..:::.:::::.:..::.  ::::::: : ::::.::::::  
CCDS14 IGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQ
       240       250       260       270       280       290       

            270         280       290       300       310       320
pF1KB9 GGVEAVKNELRRQAP--PPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTA
       ::.:::..:.::: :  :::::::::   : ::  ...      .::..: ::   .: .
CCDS14 GGLEAVRQEMRRQEPLPPPPPPSRGGNQLPRPPIVGGN------KGRSGPLPP---VPLG
       300       310       320       330             340           

              330       340       350       360       370       380
pF1KB9 APPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPP
         ::::  :      ::::.:  :::::  :... ::: ::::   : ::  ::::::::
CCDS14 IAPPPPTPR-----GPPPPGRGGPPPPPP-PATGRSGPLPPPPPGAG-GPPMPPPPPPPP
      350            360       370        380        390       400 

                  390       400       410       420       430      
pF1KB9 PPP----GPPPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDA
       :::    :: :::  :.     ::  ::. :        :.               :: :
CCDS14 PPPSSGNGPAPPPLPPA----LVP--AGGLAP-------GG---------------GRGA
             410           420                               430   

        440       450       460         470       480       490    
pF1KB9 LLDQIRQGIQLKSVADGQESTPPTPAPTS--GIVGALMEVMQKRSKAIHSSDEDEDEDDE
       :::::::::::...  . ::.   : : :  :.:::::.::::::.::::::: ::.  .
CCDS14 LLDQIRQGIQLNKTPGAPESSALQPPPQSSEGLVGALMHVMQKRSRAIHSSDEGEDQAGD
           440       450       460       470       480       490   

          500     
pF1KB9 EDFEDDDEWED
       ::  .::::.:
CCDS14 ED--EDDEWDD
             500  




505 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:40:11 2016 done: Sat Nov  5 19:40:12 2016
 Total Scan time:  4.060 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]