Result of FASTA (ccds) for
pF1KB9140
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9140, 376 aa
1>>>pF1KB9140 376 - 376 aa - 376 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3448+/-0.000812; mu= 12.3830+/- 0.049
mean_var=100.4781+/-19.749, 0's: 0 Z-trim(110.2): 29 B-trim: 8 in 1/49
Lambda= 0.127949
statistics sampled from 11433 (11448) to 11433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.352), width: 16
Scan time: 2.570
The best scores are: opt bits E(32554)
CCDS73031.1 GPATCH2 gene_id:55105|Hs108|chr1 ( 376) 2567 484.1 8.8e-137
CCDS1518.1 GPATCH2 gene_id:55105|Hs108|chr1 ( 528) 2499 471.6 7e-133
CCDS9849.1 GPATCH2L gene_id:55668|Hs108|chr14 ( 477) 510 104.4 2.1e-22
CCDS9848.1 GPATCH2L gene_id:55668|Hs108|chr14 ( 482) 510 104.4 2.2e-22
>>CCDS73031.1 GPATCH2 gene_id:55105|Hs108|chr1 (376 aa)
initn: 2567 init1: 2567 opt: 2567 Z-score: 2569.1 bits: 484.1 E(32554): 8.8e-137
Smith-Waterman score: 2567; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KB9 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNKRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNKRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 MTQPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETNQTNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MTQPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETNQTNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DKMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEKESGGACGITG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DKMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEKESGGACGITG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMSSKNIKKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMSSKNIKKSG
310 320 330 340 350 360
370
pF1KB9 GTPTSMATNWTSEIPL
::::::::::::::::
CCDS73 GTPTSMATNWTSEIPL
370
>>CCDS1518.1 GPATCH2 gene_id:55105|Hs108|chr1 (528 aa)
initn: 2499 init1: 2499 opt: 2499 Z-score: 2499.2 bits: 471.6 E(32554): 7e-133
Smith-Waterman score: 2499; 100.0% identity (100.0% similar) in 366 aa overlap (1-366:1-366)
10 20 30 40 50 60
pF1KB9 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGGFAETGDHSRSISCP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 LKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSDDQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNKRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNKRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 MTQPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETNQTNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MTQPPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETNQTNK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB9 DKMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEKESGGACGITG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 DKMECEEQKVSDELMSESDSSSLSSTDAGLFTNDEGRQGDDEQSDWFYEKESGGACGITG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB9 VVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMSSKNIKKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 VVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMSSKNIKKSG
310 320 330 340 350 360
370
pF1KB9 GTPTSMATNWTSEIPL
::::::
CCDS15 GTPTSMVPIPGPVGNKRMVHFSPDSHHHDHWFSPGARTEHDQHQLLRDNRAERGHKKNCS
370 380 390 400 410 420
>>CCDS9849.1 GPATCH2L gene_id:55668|Hs108|chr14 (477 aa)
initn: 558 init1: 186 opt: 510 Z-score: 515.5 bits: 104.4 E(32554): 2.1e-22
Smith-Waterman score: 698; 40.3% identity (64.6% similar) in 362 aa overlap (25-374:1-340)
10 20 30 40 50
pF1KB9 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
:.::::::.::::..::: . : . : . :.
CCDS98 MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
10 20 30
60 70 80 90 100 110
pF1KB9 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . ::::
CCDS98 --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREV--APVTNFSDSD
40 50 60 70 80
120 130 140 150 160 170
pF1KB9 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
CCDS98 DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB9 RTMTQ--PPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
... .::: .. ..: ...: : . . : :.. .. ..
CCDS98 LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
150 160 170 180 190
240 250 260 270 280 290
pF1KB9 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
CCDS98 TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
200 210 220 230 240 250
300 310 320 330 340 350
pF1KB9 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
CCDS98 VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
260 270 280 290 300 310
360 370
pF1KB9 SKNIKKSG----GTPTSMATNWTSEIPL
.. ..:. : ::. : : .:
CCDS98 ARCLRKGRRRLVGKETSINTLGTERISHIISDPRQKDFWLPSAGKRERNQFNPLSPLYSL
320 330 340 350 360 370
>>CCDS9848.1 GPATCH2L gene_id:55668|Hs108|chr14 (482 aa)
initn: 558 init1: 186 opt: 510 Z-score: 515.5 bits: 104.4 E(32554): 2.2e-22
Smith-Waterman score: 698; 40.3% identity (64.6% similar) in 362 aa overlap (25-374:1-340)
10 20 30 40 50
pF1KB9 MFGAAGRQPIGAPAAGNSWHFSRTMEELVHDLVSALEESSEQARGG--FAETGDHSRSIS
:.::::::.::::..::: . : . : . :.
CCDS98 MDELVHDLASALEQTSEQNKLGELWEEMALSPRQ--
10 20 30
60 70 80 90 100 110
pF1KB9 CPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSLEEPSKDYRENHNNNKKDHSDSD
.:: :::::::::: . : : : ::.:.:::.: .:: :: . ::::
CCDS98 --QRRQLRKRRGRKRRS-DFTHLAEHTCCYSEASESSLDEATKDCREV--APVTNFSDSD
40 50 60 70 80
120 130 140 150 160 170
pF1KB9 DQMLVAKRRPSSNLNNNVRGKRPLWHESDFAVDNVGNRTLRRRRKVKRMAVDLPQDISNK
: : ::::.:. :: :..:. ::::: ..:. : :::::::::.. .. ....:
CCDS98 DTM-VAKRHPA--LNAIVKSKQHSWHESDSFTENAPCRPLRRRRKVKRVTSEVAASLQQK
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB9 RTMTQ--PPEGCRDQDMDSDRAYQYQEFTKNKVKKRKLKIIRQGPKIQDEGVVLESEETN
... .::: .. ..: ...: : . . : :.. .. ..
CCDS98 LKVSDWSYERGCRFKSAKKQRLSRWKENTPWTSSGHGLC----------ESAENRTFLSK
150 160 170 180 190
240 250 260 270 280 290
pF1KB9 QTNKDKMECE--EQKV-SDELMSESDSSSL-SSTDAGLFTNDEGRQGDDEQSDWFYEKES
:..:::: ::: ::: ::: ..::. ::.:.::::::::::::::::::::: :
CCDS98 TGRKERMECETDEQKQGSDENMSECETSSVCSSSDTGLFTNDEGRQGDDEQSDWFYEGEC
200 210 220 230 240 250
300 310 320 330 340 350
pF1KB9 GGACGITGVVPWWEKEDPTELDKNVPDPVFESILTGSFPLMSHPSRRGFQARLSRLHGMS
. . ...: : . .:... : .... ..: : :.:..::...::.:: : .
CCDS98 VPGFTVPNLLPKWAPDHCSEVERM--DSGLDKFSDSTFLLPSRPAQRGYHTRLNRLPGAA
260 270 280 290 300 310
360 370
pF1KB9 SKNIKKSG----GTPTSMATNWTSEIPL
.. ..:. : ::. : : .:
CCDS98 ARCLRKGRRRLVGKETSINTLGTERISHIISDPRQKEKNKALASDFPHISACAHEFNPLS
320 330 340 350 360 370
376 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 13:14:21 2016 done: Sat Nov 5 13:14:21 2016
Total Scan time: 2.570 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]