(Circular) (Six-base) MAPSORT of: pF1KB9177.seq Check: 8604 from: 1 to: 6527 pF1KB9177 6527 bp With 182 enzymes: SgfI * June 20, 2008 10:30 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 494 2142 2431 494 Size: 1648 289 4590 Fragments arranged by size: 4590 1648 289 AccI GT'mk_AC Cuts at: 1588 3565 1588 Size: 1977 4550 Acc65I G'GTAC_C Cuts at: 3543 3543 Size: 6527 AclI AA'CG_TT Cuts at: 6367 6367 Size: 6527 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 2387 2716 4352 4784 5137 5799 2387 Size: 329 1636 432 353 662 3115 Fragments arranged by size: 3115 1636 662 432 353 329 AfeI AGC'GCT Cuts at: 220 220 Size: 6527 AflIII A'CryG_T Cuts at: 546 2013 3464 3879 5679 5960 546 Size: 1467 1451 415 1800 281 1113 Fragments arranged by size: 1800 1467 1451 1113 415 281 AgeI A'CCGG_T Cuts at: 1091 1091 Size: 6527 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2344 2344 Size: 6527 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 622 654 1357 1389 1640 1672 1885 1917 3067 Size: 32 703 32 251 32 213 32 1150 Cuts at: 3067 3099 622 Size: 32 4050 Fragments arranged by size: 4050 1150 703 251 213 32 32 32 32 32 AlwNI CAG_nnn'CTG Cuts at: 2388 2474 2976 3015 3832 5270 2388 Size: 86 502 39 817 1438 3645 Fragments arranged by size: 3645 1438 817 502 86 39 ApaI G_GGCC'C Cuts at: 283 1996 2344 283 Size: 1713 348 4466 Fragments arranged by size: 4466 1713 348 ApaLI G'TGCA_C Cuts at: 463 550 1132 5365 463 Size: 87 582 4233 1625 Fragments arranged by size: 4233 1625 582 87 ApoI r'AATT_y Cuts at: 3531 5880 6136 3531 Size: 2349 256 3922 Fragments arranged by size: 3922 2349 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6527 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6527 AvaI C'yCGr_G Cuts at: 328 1822 2281 2514 2584 2933 3110 3547 328 Size: 1494 459 233 70 349 177 437 3308 Fragments arranged by size: 3308 1494 459 437 349 233 177 70 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 294 327 294 Size: 33 6494 BamHI G'GATC_C Cuts at: 592 1154 3552 592 Size: 562 2398 3567 Fragments arranged by size: 3567 2398 562 BanI G'GyrC_C Cuts at: 120 862 1344 1818 1945 3543 3957 4205 4240 Size: 742 482 474 127 1598 414 248 35 Cuts at: 4240 120 Size: 2407 Fragments arranged by size: 2407 1598 742 482 474 414 248 127 35 BanII G_rGCy'C Cuts at: 268 283 483 1996 2282 2344 2410 2591 3293 Size: 15 200 1513 286 62 66 181 702 Cuts at: 3293 3541 4571 268 Size: 248 1030 2224 Fragments arranged by size: 2224 1513 1030 702 286 248 200 181 66 62 15 BbeI G_GCGC'C Cuts at: 3961 4209 3961 Size: 248 6279 BbsI GAAGACnn'nnnn_ Cuts at: 405 1330 3142 405 Size: 925 1812 3790 Fragments arranged by size: 3790 1812 925 BbvCI CC'TCA_GC Cuts at: 2336 3512 2336 Size: 1176 5351 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1043 1077 1043 Size: 34 6493 BciVI GTATCCnnnnn_n' Cuts at: 1642 4425 5481 6527 1642 Size: 2783 1056 1046 1642 Fragments arranged by size: 2783 1642 1056 1046 BclI T'GATC_A Cuts at: 2678 4047 2678 Size: 1369 5158 BglI GCCn_nnn'nGGC Cuts at: 716 851 3451 716 Size: 135 2600 3792 Fragments arranged by size: 3792 2600 135 BglII A'GATC_T Cuts at: 4042 6079 4042 Size: 2037 4490 BlpI GC'TnA_GC Cuts at: 1669 3639 1669 Size: 1970 4557 Bme1580I G_kGCm'C Cuts at: 125 283 467 554 793 925 1029 1136 1349 Size: 158 184 87 239 132 104 107 213 Cuts at: 1349 1445 1454 1823 1996 2344 4152 4245 5369 Size: 96 9 369 173 348 1808 93 1124 Cuts at: 5369 125 Size: 1283 Fragments arranged by size: 1808 1283 1124 369 348 239 213 184 173 158 132 107 104 96 93 87 9 BmgBI CAC'GTC Cuts at: 573 2190 573 Size: 1617 4910 BmrI ACTGGGnnnn_n' Cuts at: 1601 2024 2338 2596 3739 3820 4155 6299 1601 Size: 423 314 258 1143 81 335 2144 1829 Fragments arranged by size: 2144 1829 1143 423 335 314 258 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1914 2751 4894 1914 Size: 837 2143 3547 Fragments arranged by size: 3547 2143 837 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 316 497 1017 1042 1207 2024 2310 316 Size: 181 520 25 165 817 286 4533 Fragments arranged by size: 4533 817 520 286 181 165 25 Bpu10I CC'TnA_GC Cuts at: 1736 2336 2544 2593 2959 3512 1736 Size: 600 208 49 366 553 4751 Fragments arranged by size: 4751 600 553 366 208 49 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3703 4582 5296 5594 3703 Size: 879 714 298 4636 Fragments arranged by size: 4636 879 714 298 BsaI GGTCTCn'nnnn_ Cuts at: 1506 1518 2165 2518 6231 1506 Size: 12 647 353 3713 1802 Fragments arranged by size: 3713 1802 647 353 12 BsaAI yAC'GTr Cuts at: 462 547 2016 3880 462 Size: 85 1469 1864 3109 Fragments arranged by size: 3109 1864 1469 85 BsaBI GATnn'nnATC Cuts at: 6 4041 6078 6 Size: 4035 2037 455 Fragments arranged by size: 4035 2037 455 BsaHI Gr'CG_yC Cuts at: 272 410 3147 3958 4206 4908 6404 272 Size: 138 2737 811 248 702 1496 395 Fragments arranged by size: 2737 1496 811 702 395 248 138 BsaWI w'CCGG_w Cuts at: 1091 1151 3716 4237 4915 5326 5473 5747 1091 Size: 60 2565 521 678 411 147 274 1871 Fragments arranged by size: 2565 1871 678 521 411 274 147 60 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1454 1484 3067 3097 3107 3137 1454 Size: 30 1583 30 10 30 4844 Fragments arranged by size: 4844 1583 30 30 30 10 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1703 2218 2536 3133 3529 1703 Size: 515 318 597 396 4701 Fragments arranged by size: 4701 597 515 396 318 BseYI C'CCAG_C Cuts at: 215 433 757 764 2158 2922 3952 4710 5375 Size: 218 324 7 1394 764 1030 758 665 Cuts at: 5375 5783 215 Size: 408 959 Fragments arranged by size: 1394 1030 959 764 758 665 408 324 218 7 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 527 682 1244 1445 1537 1684 1965 1987 1994 Size: 155 562 201 92 147 281 22 7 Cuts at: 1994 2170 2186 527 Size: 176 16 4868 Fragments arranged by size: 4868 562 281 201 176 155 147 92 22 16 7 BsiEI CG_ry'CG Cuts at: 104 309 4069 4115 5345 104 Size: 205 3760 46 1230 1286 Fragments arranged by size: 3760 1286 1230 205 46 BsiHKAI G_wGCw'C Cuts at: 467 554 1136 1292 3293 3541 4319 4509 5369 Size: 87 582 156 2001 248 778 190 860 Cuts at: 5369 467 Size: 1625 Fragments arranged by size: 2001 1625 860 778 582 248 190 156 87 BsmI GAATG_Cn' Cuts at: 2270 2270 Size: 6527 BsmBI CGTCTCn'nnnn_ Cuts at: 1195 1902 2481 3154 1195 Size: 707 579 673 4568 Fragments arranged by size: 4568 707 673 579 Bsp1286I G_dGCh'C Cuts at: 125 268 283 467 483 554 793 925 1029 Size: 143 15 184 16 71 239 132 104 Cuts at: 1029 1136 1292 1349 1445 1454 1823 1996 2282 Size: 107 156 57 96 9 369 173 286 Cuts at: 2282 2344 2410 2591 3293 3541 4152 4245 4319 Size: 62 66 181 702 248 611 93 74 Cuts at: 4319 4509 4571 5369 125 Size: 190 62 798 1283 Fragments arranged by size: 1283 798 702 611 369 286 248 239 190 184 181 173 156 143 132 107 104 96 93 74 71 66 62 62 57 16 15 9 BspHI T'CATG_A Cuts at: 1718 4959 1718 Size: 3241 3286 BspMI ACCTGCnnnn'nnnn_ Cuts at: 206 494 2142 2431 2888 3577 3791 4093 4474 Size: 288 1648 289 457 689 214 302 381 Cuts at: 4474 206 Size: 2259 Fragments arranged by size: 2259 1648 689 457 381 302 289 288 214 BsrBI CCG'CTC Cuts at: 50 677 1884 4819 4873 6357 6522 50 Size: 627 1207 2935 54 1484 165 55 Fragments arranged by size: 2935 1484 1207 627 165 55 54 BsrDI GCAATG_nn' Cuts at: 4439 4439 Size: 6527 BsrFI r'CCGG_y Cuts at: 1091 1415 1559 1673 1787 4525 4706 1091 Size: 324 144 114 114 2738 181 2912 Fragments arranged by size: 2912 2738 324 181 144 114 114 BssHII G'CGCG_C Cuts at: 349 349 Size: 6527 BssSI C'ACGA_G Cuts at: 403 4798 5506 403 Size: 4395 708 1424 Fragments arranged by size: 4395 1424 708 BstAPI GCAn_nnn'nTGC Cuts at: 1131 2474 2976 3904 1131 Size: 1343 502 928 3754 Fragments arranged by size: 3754 1343 928 502 BstBI TT'CG_AA Cuts at: 4888 4888 Size: 6527 BstXI CCAn_nnnn'nTGG Cuts at: 699 714 1599 699 Size: 15 885 5627 Fragments arranged by size: 5627 885 15 BstYI r'GATC_y Cuts at: 1 592 988 1154 1163 2084 3552 4019 4042 Size: 591 396 166 9 921 1468 467 23 Cuts at: 4042 4377 4623 4929 4941 5027 6079 1 Size: 335 246 306 12 86 1052 449 Fragments arranged by size: 1468 1052 921 591 467 449 396 335 306 246 166 86 23 12 9 Bsu36I CC'TnA_GG Cuts at: 1633 2201 1633 Size: 568 5959 BtgI C'CryG_G Cuts at: 107 1577 1753 2223 107 Size: 1470 176 470 4411 Fragments arranged by size: 4411 1470 470 176 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4477 4658 4821 4477 Size: 181 163 6183 Fragments arranged by size: 6183 181 163 BtsI GCAGTG_nn' Cuts at: 925 1916 1977 3770 925 Size: 991 61 1793 3682 Fragments arranged by size: 3682 1793 991 61 DraI TTT'AAA Cuts at: 3526 3526 Size: 6527 DraIII CAC_nnn'GTG Cuts at: 513 513 Size: 6527 DrdI GACnn_nn'nnGTC Cuts at: 237 4233 5577 237 Size: 3996 1344 1187 Fragments arranged by size: 3996 1344 1187 EaeI y'GGCC_r Cuts at: 191 1404 1675 2438 2569 2658 2996 3167 4112 Size: 1213 271 763 131 89 338 171 945 Cuts at: 4112 4286 4677 4704 6049 191 Size: 174 391 27 1345 669 Fragments arranged by size: 1345 1213 945 763 669 391 338 271 174 171 131 89 27 EagI C'GGCC_G Cuts at: 4112 4112 Size: 6527 EarI CTCTTCn'nnn_ Cuts at: 151 577 2257 2300 2363 4550 4760 151 Size: 426 1680 43 63 2187 210 1918 Fragments arranged by size: 2187 1918 1680 426 210 63 43 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1537 4735 5477 5623 6337 1537 Size: 3198 742 146 714 1727 Fragments arranged by size: 3198 1727 742 714 146 EcoICRI GAG'CTC Cuts at: 3291 3539 3291 Size: 248 6279 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 316 497 1017 1042 1207 2024 2310 2387 2716 Size: 181 520 25 165 817 286 77 329 Cuts at: 2716 4352 4784 5137 5799 316 Size: 1636 432 353 662 1044 Fragments arranged by size: 1636 1044 817 662 520 432 353 329 286 181 165 77 25 EcoO109I rG'GnC_Cy Cuts at: 279 945 1697 1705 2067 2340 2373 2549 2634 Size: 666 752 8 362 273 33 176 85 Cuts at: 2634 2822 2907 3042 3666 279 Size: 188 85 135 624 3140 Fragments arranged by size: 3140 752 666 624 362 273 188 176 135 85 85 33 8 EcoRI G'AATT_C Cuts at: 3531 3531 Size: 6527 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4546 4546 Size: 6527 FspI TGC'GCA Cuts at: 319 4308 319 Size: 3989 2538 FspAI rTGC'GCAy Cuts at: 319 319 Size: 6527 HaeII r_GCGC'y Cuts at: 222 725 765 1422 3961 4209 5439 6210 222 Size: 503 40 657 2539 248 1230 771 539 Fragments arranged by size: 2539 1230 771 657 539 503 248 40 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 3132 3164 3202 3234 4369 4399 4401 4431 3132 Size: 32 38 32 1135 30 2 30 5228 Fragments arranged by size: 5228 1135 38 32 32 30 30 2 HincII GTy'rAC Cuts at: 1589 3566 1589 Size: 1977 4550 HindIII A'AGCT_T Cuts at: 1019 1019 Size: 6527 KasI G'GCGC_C Cuts at: 3957 4205 3957 Size: 248 6279 KpnI G_GTAC'C Cuts at: 3547 3547 Size: 6527 MluI A'CGCG_T Cuts at: 5960 5960 Size: 6527 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1739 3048 5286 5470 1739 Size: 1309 2238 184 2796 Fragments arranged by size: 2796 2238 1309 184 MscI TGG'CCA Cuts at: 193 3169 4288 193 Size: 2976 1119 2432 Fragments arranged by size: 2976 2432 1119 MslI CAynn'nnrTG Cuts at: 460 809 824 1597 1717 2716 4516 4643 460 Size: 349 15 773 120 999 1800 127 2344 Fragments arranged by size: 2344 1800 999 773 349 127 120 15 MspA1I CmG'CkG Cuts at: 532 869 1228 1333 1509 1668 1959 2091 2365 Size: 337 359 105 176 159 291 132 274 Cuts at: 2365 2388 2973 3511 3638 3952 4312 5096 5341 Size: 23 585 538 127 314 360 784 245 Cuts at: 5341 532 Size: 1718 Fragments arranged by size: 1718 784 585 538 360 359 337 314 291 274 245 176 159 132 127 105 23 NaeI GCC'GGC Cuts at: 1417 1675 4708 1417 Size: 258 3033 3236 Fragments arranged by size: 3236 3033 258 NarI GG'CG_CC Cuts at: 3958 4206 3958 Size: 248 6279 NcoI C'CATG_G Cuts at: 107 1577 107 Size: 1470 5057 NgoMIV G'CCGG_C Cuts at: 1415 1673 4706 1415 Size: 258 3033 3236 Fragments arranged by size: 3236 3033 258 NspI r_CATG'y Cuts at: 1774 2262 3009 3438 3468 3580 4080 5683 1774 Size: 488 747 429 30 112 500 1603 2618 Fragments arranged by size: 2618 1603 747 500 488 429 112 30 PasI CC'CwG_GG Cuts at: 714 2316 3309 714 Size: 1602 993 3932 Fragments arranged by size: 3932 1602 993 PciI A'CATG_T Cuts at: 3464 5679 3464 Size: 2215 4312 PflMI CCAn_nnn'nTGG Cuts at: 113 1497 1583 113 Size: 1384 86 5057 Fragments arranged by size: 5057 1384 86 PmeI GTTT'AAAC Cuts at: 3526 3526 Size: 6527 PmlI CAC'GTG Cuts at: 547 2016 547 Size: 1469 5058 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3013 3045 3067 3099 4973 5005 3013 Size: 32 22 32 1874 32 4535 Fragments arranged by size: 4535 1874 32 32 32 22 PpuMI rG'GwC_Cy Cuts at: 2549 2634 2907 3042 2549 Size: 85 273 135 6034 Fragments arranged by size: 6034 273 135 85 PspOMI G'GGCC_C Cuts at: 279 1992 2340 279 Size: 1713 348 4466 Fragments arranged by size: 4466 1713 348 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 2824 2856 3472 3504 2824 Size: 32 616 32 5847 Fragments arranged by size: 5847 616 32 32 PstI C_TGCA'G Cuts at: 650 886 1233 2333 2537 2582 3574 4259 650 Size: 236 347 1100 204 45 992 685 2918 Fragments arranged by size: 2918 1100 992 685 347 236 204 45 PvuI CG_AT'CG Cuts at: 104 104 Size: 6527 PvuII CAG'CTG Cuts at: 1228 1333 1668 1959 2091 2365 2388 2973 3511 Size: 105 335 291 132 274 23 585 538 Cuts at: 3511 3952 4312 1228 Size: 441 360 3443 Fragments arranged by size: 3443 585 538 441 360 335 291 274 132 105 23 RsrII CG'GwC_CG Cuts at: 4722 4722 Size: 6527 SacI G_AGCT'C Cuts at: 3293 3541 3293 Size: 248 6279 SalI G'TCGA_C Cuts at: 1587 3564 1587 Size: 1977 4550 SapI GCTCTTCn'nnn_ Cuts at: 577 4550 4760 577 Size: 3973 210 2344 Fragments arranged by size: 3973 2344 210 SbfI CC_TGCA'GG Cuts at: 3574 3574 Size: 6527 ScaI AGT'ACT Cuts at: 6044 6044 Size: 6527 SexAI A'CCwGG_T Cuts at: 365 365 Size: 6527 SfcI C'TryA_G Cuts at: 33 646 684 882 1229 2329 2533 2578 3186 Size: 613 38 198 347 1100 204 45 608 Cuts at: 3186 3421 3570 4255 5223 5414 33 Size: 235 149 685 968 191 1146 Fragments arranged by size: 1146 1100 968 685 613 608 347 235 204 198 191 149 45 38 SfoI GGC'GCC Cuts at: 3959 4207 3959 Size: 248 6279 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6527 SmaI CCC'GGG Cuts at: 330 1824 3549 330 Size: 1494 1725 3308 Fragments arranged by size: 3308 1725 1494 SmlI C'TyrA_G Cuts at: 2933 3682 4597 5311 5573 2933 Size: 749 915 714 262 3887 Fragments arranged by size: 3887 915 749 714 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6527 SphI G_CATG'C Cuts at: 2262 3009 3438 3580 4080 2262 Size: 747 429 142 500 4709 Fragments arranged by size: 4709 747 500 429 142 SrfI GCCC'GGGC Cuts at: 330 1824 330 Size: 1494 5033 StuI AGG'CCT Cuts at: 880 2199 3454 880 Size: 1319 1255 3953 Fragments arranged by size: 3953 1319 1255 StyI C'CwwG_G Cuts at: 107 782 1301 1577 1814 3252 3661 4015 107 Size: 675 519 276 237 1438 409 354 2619 Fragments arranged by size: 2619 1438 675 519 409 354 276 237 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 1109 1963 4110 4243 4702 4911 1109 Size: 854 2147 133 459 209 2725 Fragments arranged by size: 2725 2147 854 459 209 133 TatI w'GTAC_w Cuts at: 534 6042 534 Size: 5508 1019 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1206 1238 1454 1486 1716 1748 2764 2796 6044 Size: 32 216 32 230 32 1016 32 3248 Cuts at: 6044 6076 1206 Size: 32 1657 Fragments arranged by size: 3248 1657 1016 230 216 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 499 4324 499 Size: 3825 2702 XbaI T'CTAG_A Cuts at: 3558 3558 Size: 6527 XcmI CCAnnnn_n'nnnnTGG Cuts at: 147 1072 1308 2139 2609 4022 147 Size: 925 236 831 470 1413 2652 Fragments arranged by size: 2652 1413 925 831 470 236 XhoI C'TCGA_G Cuts at: 2933 2933 Size: 6527 XmaI C'CCGG_G Cuts at: 328 1822 3547 328 Size: 1494 1725 3308 Fragments arranged by size: 3308 1725 1494 XmnI GAAnn'nnTTC Cuts at: 1240 3028 1240 Size: 1788 4739 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AfeI AflIII AgeI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoO109I EcoRI FalI FspI FspAI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PflMI PmeI PmlI PpiI PpuMI PspOMI PsrI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SexAI SfcI SfoI SgfI SmaI SmlI SpeI SphI SrfI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI Enzymes that do not cut: AatII AflII AhdI AleI AscI AvrII BfrBI BmtI BsiWI BspEI BsrGI BstEII BstZ17I ClaI CspCI EcoNI EcoRV FseI HpaI MfeI NdeI NheI NotI NruI NsiI PacI PfoI PshAI PsiI PspXI SacII SanDI SfiI SgrAI SnaBI SspI SwaI ZraI