Result of FASTA (ccds) for
pF1KB9213
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9213, 839 aa
1>>>pF1KB9213 839 - 839 aa - 839 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4611+/-0.00111; mu= 10.2925+/- 0.066
mean_var=101.8011+/-20.311, 0's: 0 Z-trim(105.9): 38 B-trim: 284 in 1/48
Lambda= 0.127115
statistics sampled from 8656 (8666) to 8656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.266), width: 16
Scan time: 4.440
The best scores are: opt bits E(32554)
CCDS42413.1 PPP4R1 gene_id:9989|Hs108|chr18 ( 933) 4214 783.9 0
CCDS42412.1 PPP4R1 gene_id:9989|Hs108|chr18 ( 950) 4214 783.9 0
>>CCDS42413.1 PPP4R1 gene_id:9989|Hs108|chr18 (933 aa)
initn: 4308 init1: 4214 opt: 4214 Z-score: 4176.1 bits: 783.9 E(32554): 0
Smith-Waterman score: 4725; 87.3% identity (87.3% similar) in 871 aa overlap (80-839:63-933)
50 60 70 80 90 100
pF1KB9 RLDKYAASENIFNRQMVARSLLDTLREVCDDERDCIAVLERISRLADDSEPTVRAELMEQ
::::::::::::::::::::::::::::::
CCDS42 RLDKYAASENIFNRQMVARSLLDTLREVCDDERDCIAVLERISRLADDSEPTVRAELMEQ
40 50 60 70 80 90
110 120 130 140 150 160
pF1KB9 VPHIALFCQENRPSIPYAFSKFLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VPHIALFCQENRPSIPYAFSKFLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDV
100 110 120 130 140 150
170 180 190
pF1KB9 ETKVCPVLIELTAPDSNDDVKTEAVA----------------------------------
::::::::::::::::::::::::::
CCDS42 ETKVCPVLIELTAPDSNDDVKTEAVAIMCKMAPMVGKDITERLILPRFCEMCCDCRMFHV
160 170 180 190 200 210
pF1KB9 ------------------------------------------------------------
CCDS42 RKVCAANFGDICSVVGQQATEEMLLPRFFQLCSDNVWGVRKACAECFMAVSCATCQEIRR
220 230 240 250 260 270
200 210 220 230
pF1KB9 -----------------VRQAAFQSLGPFISTFANPSSSGQYFKEESKSSEEMSVENKNR
:::::::::::::::::::::::::::::::::::::::::::
CCDS42 TKLSALFINLISDPSRWVRQAAFQSLGPFISTFANPSSSGQYFKEESKSSEEMSVENKNR
280 290 300 310 320 330
240 250 260 270 280 290
pF1KB9 TRDQEAPEDVQVRPEDTPSDLSVSNSSVILENTMEDHAAEASGKPLGEISVPLDSSLLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TRDQEAPEDVQVRPEDTPSDLSVSNSSVILENTMEDHAAEASGKPLGEISVPLDSSLLCT
340 350 360 370 380 390
300 310 320 330 340 350
pF1KB9 LSSESHQEAASNENDKKPGNYKSMLRPEVGTTSQDSALLDQELYNSFHFWRTPLPEIDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSSESHQEAASNENDKKPGNYKSMLRPEVGTTSQDSALLDQELYNSFHFWRTPLPEIDLD
400 410 420 430 440 450
360 370 380 390 400 410
pF1KB9 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEV
460 470 480 490 500 510
420 430 440 450 460 470
pF1KB9 LSAALRASSLDAHEETISIEKRSDLQDELDINELPNCKINQEDSVPLISDAVENMDSTLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSAALRASSLDAHEETISIEKRSDLQDELDINELPNCKINQEDSVPLISDAVENMDSTLH
520 530 540 550 560 570
480 490 500 510 520 530
pF1KB9 YIHSDSDLSNNSSFSPDEERRTKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YIHSDSDLSNNSSFSPDEERRTKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSL
580 590 600 610 620 630
540 550 560 570 580 590
pF1KB9 PGVALTLGRQNWHCLRETYETLASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PGVALTLGRQNWHCLRETYETLASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNG
640 650 660 670 680 690
600 610 620 630 640 650
pF1KB9 FLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILL
700 710 720 730 740 750
660 670 680 690 700 710
pF1KB9 LELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVKKLHAATPPTFGVDLINELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVKKLHAATPPTFGVDLINELV
760 770 780 790 800 810
720 730 740 750 760 770
pF1KB9 ENFGRCPKWSGRQAFVFVCQTVIEDDCLPMDQFAVHLMPHLLTLANDRVPNVRVLLAKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ENFGRCPKWSGRQAFVFVCQTVIEDDCLPMDQFAVHLMPHLLTLANDRVPNVRVLLAKTL
820 830 840 850 860 870
780 790 800 810 820 830
pF1KB9 RQTLLEKDYFLASASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKISEDAMSTASST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RQTLLEKDYFLASASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKISEDAMSTASST
880 890 900 910 920 930
pF1KB9 Y
:
CCDS42 Y
>>CCDS42412.1 PPP4R1 gene_id:9989|Hs108|chr18 (950 aa)
initn: 4214 init1: 4214 opt: 4214 Z-score: 4176.0 bits: 783.9 E(32554): 0
Smith-Waterman score: 4725; 87.3% identity (87.3% similar) in 871 aa overlap (80-839:80-950)
50 60 70 80 90 100
pF1KB9 RLDKYAASENIFNRQMVARSLLDTLREVCDDERDCIAVLERISRLADDSEPTVRAELMEQ
::::::::::::::::::::::::::::::
CCDS42 RLDKYAASENIFNRQMVARSLLDTLREVCDDERDCIAVLERISRLADDSEPTVRAELMEQ
50 60 70 80 90 100
110 120 130 140 150 160
pF1KB9 VPHIALFCQENRPSIPYAFSKFLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VPHIALFCQENRPSIPYAFSKFLLPIVVRYLADQNNQVRKTSQAALLALLEQELIERFDV
110 120 130 140 150 160
170 180 190
pF1KB9 ETKVCPVLIELTAPDSNDDVKTEAVA----------------------------------
::::::::::::::::::::::::::
CCDS42 ETKVCPVLIELTAPDSNDDVKTEAVAIMCKMAPMVGKDITERLILPRFCEMCCDCRMFHV
170 180 190 200 210 220
pF1KB9 ------------------------------------------------------------
CCDS42 RKVCAANFGDICSVVGQQATEEMLLPRFFQLCSDNVWGVRKACAECFMAVSCATCQEIRR
230 240 250 260 270 280
200 210 220 230
pF1KB9 -----------------VRQAAFQSLGPFISTFANPSSSGQYFKEESKSSEEMSVENKNR
:::::::::::::::::::::::::::::::::::::::::::
CCDS42 TKLSALFINLISDPSRWVRQAAFQSLGPFISTFANPSSSGQYFKEESKSSEEMSVENKNR
290 300 310 320 330 340
240 250 260 270 280 290
pF1KB9 TRDQEAPEDVQVRPEDTPSDLSVSNSSVILENTMEDHAAEASGKPLGEISVPLDSSLLCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TRDQEAPEDVQVRPEDTPSDLSVSNSSVILENTMEDHAAEASGKPLGEISVPLDSSLLCT
350 360 370 380 390 400
300 310 320 330 340 350
pF1KB9 LSSESHQEAASNENDKKPGNYKSMLRPEVGTTSQDSALLDQELYNSFHFWRTPLPEIDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSSESHQEAASNENDKKPGNYKSMLRPEVGTTSQDSALLDQELYNSFHFWRTPLPEIDLD
410 420 430 440 450 460
360 370 380 390 400 410
pF1KB9 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IELEQNSGGKPSPEGPEEESEGPVPSSPNITMATRKELEEMIENLEPHIDDPDVKAQVEV
470 480 490 500 510 520
420 430 440 450 460 470
pF1KB9 LSAALRASSLDAHEETISIEKRSDLQDELDINELPNCKINQEDSVPLISDAVENMDSTLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSAALRASSLDAHEETISIEKRSDLQDELDINELPNCKINQEDSVPLISDAVENMDSTLH
530 540 550 560 570 580
480 490 500 510 520 530
pF1KB9 YIHSDSDLSNNSSFSPDEERRTKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YIHSDSDLSNNSSFSPDEERRTKVQDVVPQALLDQYLSMTDPSRAQTVDTEIAKHCAYSL
590 600 610 620 630 640
540 550 560 570 580 590
pF1KB9 PGVALTLGRQNWHCLRETYETLASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PGVALTLGRQNWHCLRETYETLASDMQWKVRRTLAFSIHELAVILGDQLTAADLVPIFNG
650 660 670 680 690 700
600 610 620 630 640 650
pF1KB9 FLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FLKDLDEVRIGVLKHLHDFLKLLHIDKRREYLYQLQEFLVTDNSRNWRFRAELAEQLILL
710 720 730 740 750 760
660 670 680 690 700 710
pF1KB9 LELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVKKLHAATPPTFGVDLINELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LELYSPRDVYDYLRPIALNLCADKVSSVRWISYKLVSEMVKKLHAATPPTFGVDLINELV
770 780 790 800 810 820
720 730 740 750 760 770
pF1KB9 ENFGRCPKWSGRQAFVFVCQTVIEDDCLPMDQFAVHLMPHLLTLANDRVPNVRVLLAKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ENFGRCPKWSGRQAFVFVCQTVIEDDCLPMDQFAVHLMPHLLTLANDRVPNVRVLLAKTL
830 840 850 860 870 880
780 790 800 810 820 830
pF1KB9 RQTLLEKDYFLASASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKISEDAMSTASST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RQTLLEKDYFLASASCHQEAVEQTIMALQMDRDSDVKYFASIHPASTKISEDAMSTASST
890 900 910 920 930 940
pF1KB9 Y
:
CCDS42 Y
950
>--
initn: 506 init1: 506 opt: 506 Z-score: 500.9 bits: 103.9 E(32554): 1.4e-21
Smith-Waterman score: 506; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)
10 20 30 40 50 60
pF1KB9 MADLSLLQEDLQEDADGFGVDDYSSESDVIIIPSALDFVSQDEMLTPLGRLDKYAASENI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MADLSLLQEDLQEDADGFGVDDYSSESDVIIIPSALDFVSQDEMLTPLGRLDKYAASENI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 FNRQMVARSLLDTLREVCDDERDCIAVLERISRLADDSEPTVRAELMEQVPHIALFCQEN
:::::::::::::::::::
CCDS42 FNRQMVARSLLDTLREVCDDERDCIAVLERISRLADDSEPTVRAELMEQVPHIALFCQEN
70 80 90 100 110 120
839 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 23:06:36 2016 done: Thu Nov 3 23:06:36 2016
Total Scan time: 4.440 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]