(Circular) (Six-base) MAPSORT of: pF1KB9259.seq Check: 7671 from: 1 to: 6050 pF1KB9259 6050 bp With 182 enzymes: SgfI * April 24, 2009 13:08 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1203 2010 2079 1203 Size: 807 69 5174 Fragments arranged by size: 5174 807 69 AccI GT'mk_AC Cuts at: 3088 3088 Size: 6050 Acc65I G'GTAC_C Cuts at: 3066 3066 Size: 6050 AclI AA'CG_TT Cuts at: 5890 5890 Size: 6050 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 305 1701 3875 4307 4660 5322 305 Size: 1396 2174 432 353 662 1033 Fragments arranged by size: 2174 1396 1033 662 432 353 AfeI AGC'GCT Cuts at: 2125 2899 2125 Size: 774 5276 AflIII A'CryG_T Cuts at: 3402 5202 5483 3402 Size: 1800 281 3969 Fragments arranged by size: 3969 1800 281 AgeI A'CCGG_T Cuts at: 1246 1246 Size: 6050 AhdI GACnn_n'nnGTC Cuts at: 1084 1084 Size: 6050 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2493 2493 Size: 6050 AlwNI CAG_nnn'CTG Cuts at: 1518 2721 3355 4793 1518 Size: 1203 634 1438 2775 Fragments arranged by size: 2775 1438 1203 634 ApaI G_GGCC'C Cuts at: 187 201 293 400 557 701 1831 2267 2274 Size: 14 92 107 157 144 1130 436 7 Cuts at: 2274 187 Size: 3963 Fragments arranged by size: 3963 1130 436 157 144 107 92 14 7 ApaLI G'TGCA_C Cuts at: 4888 4888 Size: 6050 ApoI r'AATT_y Cuts at: 3054 5403 5659 3054 Size: 2349 256 3445 Fragments arranged by size: 3445 2349 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6050 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6050 AvaI C'yCGr_G Cuts at: 255 556 747 1020 1140 1913 2267 2584 3025 Size: 301 191 273 120 773 354 317 441 Cuts at: 3025 3070 255 Size: 45 3235 Fragments arranged by size: 3235 773 441 354 317 301 273 191 120 45 BamHI G'GATC_C Cuts at: 1439 2685 3075 1439 Size: 1246 390 4414 Fragments arranged by size: 4414 1246 390 BanI G'GyrC_C Cuts at: 445 620 672 863 1215 1899 1905 2543 3066 Size: 175 52 191 352 684 6 638 523 Cuts at: 3066 3480 3728 3763 445 Size: 414 248 35 2732 Fragments arranged by size: 2732 684 638 523 414 352 248 191 175 52 35 6 BanII G_rGCy'C Cuts at: 187 201 217 242 293 400 557 593 607 Size: 14 16 25 51 107 157 36 14 Cuts at: 607 701 754 1166 1456 1831 2255 2267 2274 Size: 94 53 412 290 375 424 12 7 Cuts at: 2274 3064 4094 187 Size: 790 1030 2143 Fragments arranged by size: 2143 1030 790 424 412 375 290 157 107 94 53 51 36 25 16 14 14 12 7 BbeI G_GCGC'C Cuts at: 676 1903 3484 3732 676 Size: 1227 1581 248 2994 Fragments arranged by size: 2994 1581 1227 248 BbsI GAAGACnn'nnnn_ Cuts at: 422 2210 2280 422 Size: 1788 70 4192 Fragments arranged by size: 4192 1788 70 BbvCI CC'TCA_GC Cuts at: 707 707 Size: 6050 BciVI GTATCCnnnnn_n' Cuts at: 1129 3948 5004 6050 1129 Size: 2819 1056 1046 1129 Fragments arranged by size: 2819 1129 1056 1046 BclI T'GATC_A Cuts at: 3570 3570 Size: 6050 BglI GCCn_nnn'nGGC Cuts at: 1630 2180 2194 1630 Size: 550 14 5486 Fragments arranged by size: 5486 550 14 BglII A'GATC_T Cuts at: 3014 3565 5602 3014 Size: 551 2037 3462 Fragments arranged by size: 3462 2037 551 BlpI GC'TnA_GC Cuts at: 1495 3162 1495 Size: 1667 4383 Bme1580I G_kGCm'C Cuts at: 187 201 255 293 400 450 557 580 701 Size: 14 54 38 107 50 107 23 121 Cuts at: 701 1831 2267 2274 2708 3675 3768 4892 187 Size: 1130 436 7 434 967 93 1124 1345 Fragments arranged by size: 1345 1130 1124 967 436 434 121 107 107 93 54 50 38 23 14 7 BmgBI CAC'GTC Cuts at: 180 180 Size: 6050 BmrI ACTGGGnnnn_n' Cuts at: 1239 3262 3343 3678 5822 1239 Size: 2023 81 335 2144 1467 Fragments arranged by size: 2144 2023 1467 335 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 246 2049 2091 4417 246 Size: 1803 42 2326 1879 Fragments arranged by size: 2326 1879 1803 42 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 201 688 746 776 994 1380 1540 1573 1912 Size: 487 58 30 218 386 160 33 339 Cuts at: 1912 2182 2188 2554 2617 2800 2839 201 Size: 270 6 366 63 183 39 3412 Fragments arranged by size: 3412 487 386 366 339 270 218 183 160 63 58 39 33 30 6 Bpu10I CC'TnA_GC Cuts at: 295 707 295 Size: 412 5638 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 1023 1628 2755 2779 3226 4105 4819 5117 1023 Size: 605 1127 24 447 879 714 298 1956 Fragments arranged by size: 1956 1127 879 714 605 447 298 24 BsaI GGTCTCn'nnnn_ Cuts at: 1171 5754 1171 Size: 4583 1467 BsaAI yAC'GTr Cuts at: 2446 3403 2446 Size: 957 5093 BsaBI GATnn'nnATC Cuts at: 6 3019 3564 5601 6 Size: 3013 545 2037 455 Fragments arranged by size: 3013 2037 545 455 BsaHI Gr'CG_yC Cuts at: 673 1571 1900 3481 3729 4431 5927 673 Size: 898 329 1581 248 702 1496 796 Fragments arranged by size: 1581 1496 898 796 702 329 248 BsaWI w'CCGG_w Cuts at: 1173 1246 3239 3760 4438 4849 4996 5270 1173 Size: 73 1993 521 678 411 147 274 1953 Fragments arranged by size: 1993 1953 678 521 411 274 147 73 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1513 1540 1543 1570 2435 2465 2527 2557 2618 Size: 27 3 27 865 30 62 30 61 Cuts at: 2618 2648 1513 Size: 30 4915 Fragments arranged by size: 4915 865 62 61 30 30 30 27 27 3 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 743 843 1333 1383 1657 1695 1981 2602 2845 Size: 100 490 50 274 38 286 621 243 Cuts at: 2845 743 Size: 3948 Fragments arranged by size: 3948 621 490 286 274 243 100 50 38 BseYI C'CCAG_C Cuts at: 147 210 2255 3475 4233 4898 5306 147 Size: 63 2045 1220 758 665 408 891 Fragments arranged by size: 2045 1220 891 758 665 408 63 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 658 1035 2038 2107 2170 658 Size: 377 1003 69 63 4538 Fragments arranged by size: 4538 1003 377 69 63 BsiEI CG_ry'CG Cuts at: 104 129 1823 2005 2415 3592 3638 4868 104 Size: 25 1694 182 410 1177 46 1230 1286 Fragments arranged by size: 1694 1286 1230 1177 410 182 46 25 BsiHKAI G_wGCw'C Cuts at: 1456 2540 3064 3842 4032 4892 1456 Size: 1084 524 778 190 860 2614 Fragments arranged by size: 2614 1084 860 778 524 190 BsiWI C'GTAC_G Cuts at: 2345 2345 Size: 6050 BsmBI CGTCTCn'nnnn_ Cuts at: 2020 2020 Size: 6050 Bsp1286I G_dGCh'C Cuts at: 187 201 217 242 255 293 400 450 557 Size: 14 16 25 13 38 107 50 107 Cuts at: 557 580 593 607 701 754 1166 1456 1831 Size: 23 13 14 94 53 412 290 375 Cuts at: 1831 2255 2267 2274 2540 2708 3064 3675 3768 Size: 424 12 7 266 168 356 611 93 Cuts at: 3768 3842 4032 4094 4892 187 Size: 74 190 62 798 1345 Fragments arranged by size: 1345 798 611 424 412 375 356 290 266 190 168 107 107 94 93 74 62 53 50 38 25 23 16 14 14 13 13 12 7 BspEI T'CCGG_A Cuts at: 1173 1173 Size: 6050 BspHI T'CATG_A Cuts at: 4482 4482 Size: 6050 BspMI ACCTGCnnnn'nnnn_ Cuts at: 215 1203 1589 2010 2079 3100 3314 3616 3997 Size: 988 386 421 69 1021 214 302 381 Cuts at: 3997 215 Size: 2268 Fragments arranged by size: 2268 1021 988 421 386 381 302 214 69 BsrBI CCG'CTC Cuts at: 50 1289 1325 4342 4396 5880 6045 50 Size: 1239 36 3017 54 1484 165 55 Fragments arranged by size: 3017 1484 1239 165 55 54 36 BsrDI GCAATG_nn' Cuts at: 3962 3962 Size: 6050 BsrFI r'CCGG_y Cuts at: 1246 1633 1902 2355 2410 2886 2918 4048 4229 Size: 387 269 453 55 476 32 1130 181 Cuts at: 4229 1246 Size: 3067 Fragments arranged by size: 3067 1130 476 453 387 269 181 55 32 BssHII G'CGCG_C Cuts at: 1882 2935 2961 1882 Size: 1053 26 4971 Fragments arranged by size: 4971 1053 26 BssSI C'ACGA_G Cuts at: 1804 4321 5029 1804 Size: 2517 708 2825 Fragments arranged by size: 2825 2517 708 BstAPI GCAn_nnn'nTGC Cuts at: 3427 3427 Size: 6050 BstBI TT'CG_AA Cuts at: 4411 4411 Size: 6050 BstEII G'GTnAC_C Cuts at: 115 1237 115 Size: 1122 4928 BstXI CCAn_nnnn'nTGG Cuts at: 1071 2080 1071 Size: 1009 5041 BstYI r'GATC_y Cuts at: 1 1265 1439 2591 2603 2685 3014 3075 3542 Size: 1264 174 1152 12 82 329 61 467 Cuts at: 3542 3565 3900 4146 4452 4464 4550 5602 1 Size: 23 335 246 306 12 86 1052 449 Fragments arranged by size: 1264 1152 1052 467 449 335 329 306 246 174 86 82 61 23 12 12 Bsu36I CC'TnA_GG Cuts at: 326 2825 326 Size: 2499 3551 BtgI C'CryG_G Cuts at: 120 1307 1565 1874 2189 2912 120 Size: 1187 258 309 315 723 3258 Fragments arranged by size: 3258 1187 723 315 309 258 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 1514 4000 4181 4344 1514 Size: 2486 181 163 3220 Fragments arranged by size: 3220 2486 181 163 BtsI GCAGTG_nn' Cuts at: 578 603 2338 2616 2690 3293 578 Size: 25 1735 278 74 603 3335 Fragments arranged by size: 3335 1735 603 278 74 25 DraI TTT'AAA Cuts at: 3049 3049 Size: 6050 DrdI GACnn_nn'nnGTC Cuts at: 3756 5100 3756 Size: 1344 4706 EaeI y'GGCC_r Cuts at: 390 1820 2002 2186 2195 2357 2412 2954 2987 Size: 1430 182 184 9 162 55 542 33 Cuts at: 2987 3635 3809 4200 4227 5572 390 Size: 648 174 391 27 1345 868 Fragments arranged by size: 1430 1345 868 648 542 391 184 182 174 162 55 33 27 9 EagI C'GGCC_G Cuts at: 1820 2002 2412 3635 1820 Size: 182 410 1223 4235 Fragments arranged by size: 4235 1223 410 182 EarI CTCTTCn'nnn_ Cuts at: 708 2090 4073 4283 708 Size: 1382 1983 210 2475 Fragments arranged by size: 2475 1983 1382 210 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1839 2581 2837 2965 4258 5000 5146 5860 1839 Size: 742 256 128 1293 742 146 714 2029 Fragments arranged by size: 2029 1293 742 742 714 256 146 128 EcoICRI GAG'CTC Cuts at: 1454 3062 1454 Size: 1608 4442 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 201 305 688 746 776 994 1380 1540 1573 Size: 104 383 58 30 218 386 160 33 Cuts at: 1573 1701 1912 2182 2188 2554 2617 2800 2839 Size: 128 211 270 6 366 63 183 39 Cuts at: 2839 3875 4307 4660 5322 201 Size: 1036 432 353 662 929 Fragments arranged by size: 1036 929 662 432 386 383 366 353 270 218 211 183 160 128 104 63 58 39 33 30 6 EcoNI CCTnn'n_nnAGG Cuts at: 304 329 375 1275 2235 304 Size: 25 46 900 960 4119 Fragments arranged by size: 4119 960 900 46 25 EcoO109I rG'GnC_Cy Cuts at: 184 197 198 289 290 322 396 397 553 Size: 13 1 91 1 32 74 1 156 Cuts at: 553 760 941 989 1725 1755 1827 1828 2172 Size: 207 181 48 736 30 72 1 344 Cuts at: 2172 2211 2264 2271 2718 2736 2841 3189 184 Size: 39 53 7 447 18 105 348 3045 Fragments arranged by size: 3045 736 447 348 344 207 181 156 105 91 74 72 53 48 39 32 30 18 13 7 1 1 1 1 EcoRI G'AATT_C Cuts at: 3054 3054 Size: 6050 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4069 4069 Size: 6050 FseI GG_CCGG'CC Cuts at: 2414 2414 Size: 6050 FspI TGC'GCA Cuts at: 3831 3831 Size: 6050 HaeII r_GCGC'y Cuts at: 568 676 1020 1842 1903 2127 2901 3002 3484 Size: 108 344 822 61 224 774 101 482 Cuts at: 3484 3732 4962 5733 568 Size: 248 1230 771 885 Fragments arranged by size: 1230 885 822 774 771 482 344 248 224 108 101 61 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 298 330 1066 1070 1098 1102 1540 1572 3892 Size: 32 736 4 28 4 438 32 2320 Cuts at: 3892 3922 3924 3954 298 Size: 30 2 30 2394 Fragments arranged by size: 2394 2320 736 438 32 32 30 30 28 4 4 2 HincII GTy'rAC Cuts at: 3089 3089 Size: 6050 KasI G'GCGC_C Cuts at: 672 1899 3480 3728 672 Size: 1227 1581 248 2994 Fragments arranged by size: 2994 1581 1227 248 KpnI G_GTAC'C Cuts at: 3070 3070 Size: 6050 MluI A'CGCG_T Cuts at: 5483 5483 Size: 6050 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1010 4809 4993 1010 Size: 3799 184 2067 Fragments arranged by size: 3799 2067 184 MscI TGG'CCA Cuts at: 392 2188 2197 3811 392 Size: 1796 9 1614 2631 Fragments arranged by size: 2631 1796 1614 9 MslI CAynn'nnrTG Cuts at: 1057 1063 2014 2506 4039 4166 1057 Size: 6 951 492 1533 127 2941 Fragments arranged by size: 2941 1533 951 492 127 6 MspA1I CmG'CkG Cuts at: 340 1040 1518 1684 1992 2807 2925 3161 3475 Size: 700 478 166 308 815 118 236 314 Cuts at: 3475 3835 4619 4864 340 Size: 360 784 245 1526 Fragments arranged by size: 1526 815 784 700 478 360 314 308 245 236 166 118 NaeI GCC'GGC Cuts at: 1635 2357 2412 4231 1635 Size: 722 55 1819 3454 Fragments arranged by size: 3454 1819 722 55 NarI GG'CG_CC Cuts at: 673 1900 3481 3729 673 Size: 1227 1581 248 2994 Fragments arranged by size: 2994 1581 1227 248 NcoI C'CATG_G Cuts at: 120 1307 1874 120 Size: 1187 567 4296 Fragments arranged by size: 4296 1187 567 NdeI CA'TA_TG Cuts at: 173 173 Size: 6050 NgoMIV G'CCGG_C Cuts at: 1633 2355 2410 4229 1633 Size: 722 55 1819 3454 Fragments arranged by size: 3454 1819 722 55 NspI r_CATG'y Cuts at: 1062 1602 3103 3603 5206 1062 Size: 540 1501 500 1603 1906 Fragments arranged by size: 1906 1603 1501 540 500 PasI CC'CwG_GG Cuts at: 946 2404 946 Size: 1458 4592 PciI A'CATG_T Cuts at: 5202 5202 Size: 6050 PflMI CCAn_nnn'nTGG Cuts at: 666 884 1518 1566 2553 2721 2807 666 Size: 218 634 48 987 168 86 3909 Fragments arranged by size: 3909 987 634 218 168 86 48 PfoI T'CCnGG_A Cuts at: 470 2425 2594 2714 2777 2816 470 Size: 1955 169 120 63 39 3704 Fragments arranged by size: 3704 1955 169 120 63 39 PmeI GTTT'AAAC Cuts at: 3049 3049 Size: 6050 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4496 4528 4496 Size: 32 6018 PpuMI rG'GwC_Cy Cuts at: 989 2718 2736 2841 989 Size: 1729 18 105 4198 Fragments arranged by size: 4198 1729 105 18 PspOMI G'GGCC_C Cuts at: 183 197 289 396 553 697 1827 2263 2270 Size: 14 92 107 157 144 1130 436 7 Cuts at: 2270 183 Size: 3963 Fragments arranged by size: 3963 1130 436 157 144 107 92 14 7 PstI C_TGCA'G Cuts at: 1214 1846 2219 3097 3782 1214 Size: 632 373 878 685 3482 Fragments arranged by size: 3482 878 685 632 373 PvuI CG_AT'CG Cuts at: 104 104 Size: 6050 PvuII CAG'CTG Cuts at: 1518 2807 3475 3835 1518 Size: 1289 668 360 3733 Fragments arranged by size: 3733 1289 668 360 RsrII CG'GwC_CG Cuts at: 4245 4245 Size: 6050 SacI G_AGCT'C Cuts at: 1456 3064 1456 Size: 1608 4442 SalI G'TCGA_C Cuts at: 3087 3087 Size: 6050 SapI GCTCTTCn'nnn_ Cuts at: 4073 4283 4073 Size: 210 5840 SbfI CC_TGCA'GG Cuts at: 3097 3097 Size: 6050 ScaI AGT'ACT Cuts at: 5567 5567 Size: 6050 SexAI A'CCwGG_T Cuts at: 623 623 Size: 6050 SfcI C'TryA_G Cuts at: 33 1210 1467 1842 2215 2743 2785 3093 3778 Size: 1177 257 375 373 528 42 308 685 Cuts at: 3778 4746 4937 33 Size: 968 191 1146 Fragments arranged by size: 1177 1146 968 685 528 375 373 308 257 191 42 SfiI GGCCn_nnn'nGGCC Cuts at: 1630 2180 2194 1630 Size: 550 14 5486 Fragments arranged by size: 5486 550 14 SfoI GGC'GCC Cuts at: 674 1901 3482 3730 674 Size: 1227 1581 248 2994 Fragments arranged by size: 2994 1581 1227 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6050 SgrAI Cr'CCGG_yG Cuts at: 1246 1902 1246 Size: 656 5394 SmaI CCC'GGG Cuts at: 558 749 1142 1915 2269 3072 558 Size: 191 393 773 354 803 3536 Fragments arranged by size: 3536 803 773 393 354 191 SmlI C'TyrA_G Cuts at: 1002 1643 2770 2794 3205 4120 4834 5096 1002 Size: 641 1127 24 411 915 714 262 1956 Fragments arranged by size: 1956 1127 915 714 641 411 262 24 SpeI A'CTAG_T Cuts at: 67 67 Size: 6050 SphI G_CATG'C Cuts at: 1602 3103 3603 1602 Size: 1501 500 4049 Fragments arranged by size: 4049 1501 500 SrfI GCCC'GGGC Cuts at: 558 749 558 Size: 191 5859 StuI AGG'CCT Cuts at: 226 2183 226 Size: 1957 4093 StyI C'CwwG_G Cuts at: 120 701 1181 1307 1874 3184 3538 120 Size: 581 480 126 567 1310 354 2632 Fragments arranged by size: 2632 1310 581 567 480 354 126 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 143 446 1074 1867 3633 3766 4225 4434 143 Size: 303 628 793 1766 133 459 209 1759 Fragments arranged by size: 1766 1759 793 628 459 303 209 133 TatI w'GTAC_w Cuts at: 5565 5565 Size: 6050 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 796 828 1424 1456 1513 1545 2435 2467 2527 Size: 32 596 32 57 32 890 32 60 Cuts at: 2527 2559 2618 2650 5567 5599 796 Size: 32 59 32 2917 32 1247 Fragments arranged by size: 2917 1247 890 596 60 59 57 32 32 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 3847 3847 Size: 6050 XbaI T'CTAG_A Cuts at: 3081 3081 Size: 6050 XcmI CCAnnnn_n'nnnnTGG Cuts at: 1129 3545 1129 Size: 2416 3634 XmaI C'CCGG_G Cuts at: 556 747 1140 1913 2267 3070 556 Size: 191 393 773 354 803 3536 Fragments arranged by size: 3536 803 773 393 354 191 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AfeI AflIII AgeI AhdI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FseI FspI HaeII Hin4I HincII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PspOMI PstI PvuI PvuII RsrII SacI SalI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SpeI SphI SrfI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI Enzymes that do not cut: AatII AflII AleI AloI AscI AvrII BaeI BcgI BfrBI BmtI BsmI BsrGI BstZ17I ClaI CspCI DraIII EcoRV FspAI HindIII HpaI MfeI NheI NotI NruI NsiI PacI PmlI PshAI PsiI PspXI PsrI SacII SanDI SnaBI SspI SwaI XhoI XmnI ZraI