FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9267, 137 aa
  1>>>pF1KB9267 137 - 137 aa - 137 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6951+/-0.000656; mu= 10.2172+/- 0.039
 mean_var=80.2641+/-15.001, 0's: 0 Z-trim(112.1): 31  B-trim: 0 in 0/52
 Lambda= 0.143157
 statistics sampled from 12921 (12952) to 12921 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.766), E-opt: 0.2 (0.398), width:  16
 Scan time:  1.720

The best scores are:                                      opt bits E(32554)
CCDS31186.1 CXCL12 gene_id:6387|Hs108|chr10        ( 119)  677 148.2 1.3e-36
CCDS53527.1 CXCL12 gene_id:6387|Hs108|chr10        ( 140)  597 131.8 1.3e-31
CCDS7207.1 CXCL12 gene_id:6387|Hs108|chr10         (  89)  592 130.6 1.9e-31
CCDS44373.1 CXCL12 gene_id:6387|Hs108|chr10        (  93)  592 130.6   2e-31


>>CCDS31186.1 CXCL12 gene_id:6387|Hs108|chr10             (119 aa)
 initn: 806 init1: 677 opt: 677  Z-score: 771.1  bits: 148.2 E(32554): 1.3e-36
Smith-Waterman score: 677; 87.3% identity (94.9% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCPEKEKL
       :::::::::::::::::::::::::::::::::::::::.:  ::.  ...:.  ...  
CCDS31 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN 
               70        80        90       100       110          

              130       
pF1KB9 VICHLEMDHSSLALGAL

>>CCDS53527.1 CXCL12 gene_id:6387|Hs108|chr10             (140 aa)
 initn: 638 init1: 591 opt: 597  Z-score: 680.7  bits: 131.8 E(32554): 1.3e-31
Smith-Waterman score: 597; 73.4% identity (82.0% similar) in 128 aa overlap (1-127:1-126)

               10        20        30        40        50        60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100        110         
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR-KDRKKEATEEEKGCPEKEK
       ::::::::::::::::::::::::::::.      .::.     .       ..::  . 
CCDS53 ARLKNNNRQVCIDPKLKWIQEYLEKALNNLISAAPAGKRVIAGARALHPSPPRACPTARA
               70        80        90       100       110       120

     120       130           
pF1KB9 LVICHLEMDHSSLALGAL    
       :  :....              
CCDS53 L--CEIRLWPPPEWSWPSPGDV
                130       140

>>CCDS7207.1 CXCL12 gene_id:6387|Hs108|chr10              (89 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 678.0  bits: 130.6 E(32554): 1.9e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCPEKEKL
       :::::::::::::::::::::::::::::                               
CCDS72 ARLKNNNRQVCIDPKLKWIQEYLEKALNK                               
               70        80                                        

>>CCDS44373.1 CXCL12 gene_id:6387|Hs108|chr10             (93 aa)
 initn: 592 init1: 592 opt: 592  Z-score: 677.8  bits: 130.6 E(32554): 2e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)

               10        20        30        40        50        60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCPEKEKL
       :::::::::::::::::::::::::::::                               
CCDS44 ARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM                           
               70        80        90                              




137 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:21:45 2016 done: Thu Nov  3 18:21:45 2016
 Total Scan time:  1.720 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]