Result of FASTA (omim) for
pF1KB9267
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9267, 137 aa
1>>>pF1KB9267 137 - 137 aa - 137 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7657+/-0.000291; mu= 9.6567+/- 0.018
mean_var=80.0092+/-14.945, 0's: 0 Z-trim(118.9): 40 B-trim: 0 in 0/54
Lambda= 0.143385
statistics sampled from 32385 (32426) to 32385 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.38), width: 16
Scan time: 5.340
The best scores are: opt bits E(85289)
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 677 148.6 2.6e-36
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 597 132.1 2.9e-31
NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 592 130.9 4.1e-31
NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 592 130.9 4.2e-31
NP_001264919 (OMIM: 600835,609423) stromal cell-de ( 103) 255 61.2 4.4e-10
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 164 42.4 0.0002
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 153 40.1 0.001
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 152 39.9 0.0012
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 147 38.9 0.0021
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 142 37.9 0.0052
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 140 37.5 0.0066
>>NP_001029058 (OMIM: 600835,609423) stromal cell-derive (119 aa)
initn: 806 init1: 677 opt: 677 Z-score: 772.8 bits: 148.6 E(85289): 2.6e-36
Smith-Waterman score: 677; 87.3% identity (94.9% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCPEKEKL
:::::::::::::::::::::::::::::::::::::::.: ::. ...:. ...
NP_001 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
70 80 90 100 110
130
pF1KB9 VICHLEMDHSSLALGAL
>>NP_001171605 (OMIM: 600835,609423) stromal cell-derive (140 aa)
initn: 638 init1: 591 opt: 597 Z-score: 682.3 bits: 132.1 E(85289): 2.9e-31
Smith-Waterman score: 597; 73.4% identity (82.0% similar) in 128 aa overlap (1-127:1-126)
10 20 30 40 50 60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKR-KDRKKEATEEEKGCPEKEK
::::::::::::::::::::::::::::. .::. . ..:: .
NP_001 ARLKNNNRQVCIDPKLKWIQEYLEKALNNLISAAPAGKRVIAGARALHPSPPRACPTARA
70 80 90 100 110 120
120 130
pF1KB9 LVICHLEMDHSSLALGAL
: :....
NP_001 L--CEIRLWPPPEWSWPSPGDV
130 140
>>NP_954637 (OMIM: 600835,609423) stromal cell-derived f (89 aa)
initn: 592 init1: 592 opt: 592 Z-score: 679.6 bits: 130.9 E(85289): 4.1e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCPEKEKL
:::::::::::::::::::::::::::::
NP_954 ARLKNNNRQVCIDPKLKWIQEYLEKALNK
70 80
>>NP_000600 (OMIM: 600835,609423) stromal cell-derived f (93 aa)
initn: 592 init1: 592 opt: 592 Z-score: 679.4 bits: 130.9 E(85289): 4.2e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCPEKEKL
:::::::::::::::::::::::::::::
NP_000 ARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM
70 80 90
>>NP_001264919 (OMIM: 600835,609423) stromal cell-derive (103 aa)
initn: 265 init1: 255 opt: 255 Z-score: 302.0 bits: 61.2 E(85289): 4.4e-10
Smith-Waterman score: 255; 100.0% identity (100.0% similar) in 38 aa overlap (1-38:1-38)
10 20 30 40 50 60
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHYCTCLIRVSFHGATPLTQGSWV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCPEKEKL
NP_001 LYSLSCAGGETGLREPGPMVSPRVESHQEGRLGVPGPVNLGKA
70 80 90 100
>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa)
initn: 138 init1: 95 opt: 164 Z-score: 200.5 bits: 42.4 E(85289): 0.0002
Smith-Waterman score: 164; 31.2% identity (69.8% similar) in 96 aa overlap (1-89:1-95)
10 20 30 40 50
pF1KB9 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN
:..:..:.:. :. .::: . : : . :: : . . . .:.:..... :.
NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB9 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKG
:: .:...: ...:..:.::: .:.:. .:: :..
NP_000 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKRAENS
70 80 90
120 130
pF1KB9 CPEKEKLVICHLEMDHSSLALGAL
>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa)
initn: 133 init1: 103 opt: 153 Z-score: 187.7 bits: 40.1 E(85289): 0.001
Smith-Waterman score: 153; 29.2% identity (62.9% similar) in 89 aa overlap (4-90:17-104)
10 20 30 40
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHL
.:...:.:...: . : : :: : . . :.. .
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 KILNT-PNCA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKK
.. . :.:: ...: :::. ...:..: .:. .:: ::::
NP_002 NVRSPGPHCAQTEVIATLKNG-KKACLNPASPMVQKIIEKILNKGSTN
70 80 90 100
110 120 130
pF1KB9 EATEEEKGCPEKEKLVICHLEMDHSSLALGAL
>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa)
initn: 93 init1: 75 opt: 152 Z-score: 186.6 bits: 39.9 E(85289): 0.0012
Smith-Waterman score: 152; 26.7% identity (65.6% similar) in 90 aa overlap (4-91:17-105)
10 20 30 40
pF1KB9 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHL
.:...:.:...: . : :.. :: : . . :.. .
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB9 KILNT-PNCA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKK
:. . :.:: ...: :::. ...:..: ... .:: :..:.
NP_002 KVKSPGPHCAQTEVIATLKNG-QKACLNPASPMVKKIIEKMLKNGKSN
70 80 90 100
110 120 130
pF1KB9 EATEEEKGCPEKEKLVICHLEMDHSSLALGAL
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 116 init1: 90 opt: 147 Z-score: 182.0 bits: 38.9 E(85289): 0.0021
Smith-Waterman score: 147; 33.3% identity (66.7% similar) in 81 aa overlap (7-83:8-85)
10 20 30 40 50
pF1KB9 MNAKVVVVLVLVLTALCL-SDGKPVSLSYRCPCRFFESHVARANVK-HLK--ILNTPNC
....:. :::: ....: : : :: : ...:: . :.: . .. .:
NP_002 MKVSAAALAVILIATALCAPASASPYS-SDTTPCCF--AYIARPLPRAHIKEYFYTSGKC
10 20 30 40 50
60 70 80 90 100 110
pF1KB9 ALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKRKDRKKEATEEEKGCP
. :. . .::::: .:. ::..::.
NP_002 SNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa)
initn: 117 init1: 75 opt: 142 Z-score: 175.0 bits: 37.9 E(85289): 0.0052
Smith-Waterman score: 142; 29.8% identity (67.0% similar) in 94 aa overlap (6-93:21-113)
10 20 30 40
pF1KB9 MNAKVVVVLVLVLTALC-LSDGKPVS---LSYRCPCRFFESHVAR
...:.:.:: :... ::: :: : .:
NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
10 20 30 40 50 60
50 60 70 80 90
pF1KB9 ANVKHLKILNT-PNCA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKK
.. .:... . :.:. ...:: :::. .:::.::. .... ..: :..: ..
NP_002 KTIGKLQVFPAGPQCSKVEVVASLKNG-KQVCLDPEAPFLKKVIQKILDSGNKKN
70 80 90 100 110
100 110 120 130
pF1KB9 RKDRKKEATEEEKGCPEKEKLVICHLEMDHSSLALGAL
137 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:21:45 2016 done: Thu Nov 3 18:21:46 2016
Total Scan time: 5.340 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]