(Circular) (Six-base) MAPSORT of: pF1KB9339.seq Check: 3347 from: 1 to: 6905 pF1KB9339 6905 bp With 182 enzymes: SgfI * June 20, 2008 10:30 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 1527 2286 1527 Size: 759 6146 AatII G_ACGT'C Cuts at: 795 2744 795 Size: 1949 4956 AccI GT'mk_AC Cuts at: 1925 3943 1925 Size: 2018 4887 Acc65I G'GTAC_C Cuts at: 3921 3921 Size: 6905 AclI AA'CG_TT Cuts at: 6745 6745 Size: 6905 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1917 1929 3025 3503 3786 4730 5162 5515 6177 Size: 12 1096 478 283 944 432 353 662 Cuts at: 6177 1917 Size: 2645 Fragments arranged by size: 2645 1096 944 662 478 432 353 283 12 AflIII A'CryG_T Cuts at: 2939 3332 4257 6057 6338 2939 Size: 393 925 1800 281 3506 Fragments arranged by size: 3506 1800 925 393 281 AgeI A'CCGG_T Cuts at: 1759 1759 Size: 6905 AhdI GACnn_n'nnGTC Cuts at: 2670 3558 2670 Size: 888 6017 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 3011 3043 3011 Size: 32 6873 AlwNI CAG_nnn'CTG Cuts at: 1720 1830 1971 3138 3642 4210 5648 1720 Size: 110 141 1167 504 568 1438 2977 Fragments arranged by size: 2977 1438 1167 568 504 141 110 ApaI G_GGCC'C Cuts at: 2616 2616 Size: 6905 ApaLI G'TGCA_C Cuts at: 5743 5743 Size: 6905 ApoI r'AATT_y Cuts at: 217 376 590 1330 1726 2893 3909 6258 6514 Size: 159 214 740 396 1167 1016 2349 256 Cuts at: 6514 217 Size: 608 Fragments arranged by size: 2349 1167 1016 740 608 396 256 214 159 AseI AT'TA_AT Cuts at: 20 20 Size: 6905 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6905 AvaI C'yCGr_G Cuts at: 1052 1528 2086 2427 2516 3146 3925 1052 Size: 476 558 341 89 630 779 4032 Fragments arranged by size: 4032 779 630 558 476 341 89 BamHI G'GATC_C Cuts at: 3930 3930 Size: 6905 BanI G'GyrC_C Cuts at: 1038 3483 3921 4335 4583 4618 1038 Size: 2445 438 414 248 35 3325 Fragments arranged by size: 3325 2445 438 414 248 35 BanII G_rGCy'C Cuts at: 811 860 926 2299 2616 2864 2975 3233 3298 Size: 49 66 1373 317 248 111 258 65 Cuts at: 3298 3919 4949 811 Size: 621 1030 2767 Fragments arranged by size: 2767 1373 1030 621 317 258 248 111 66 65 49 BbeI G_GCGC'C Cuts at: 1042 3487 4339 4587 1042 Size: 2445 852 248 3360 Fragments arranged by size: 3360 2445 852 248 BbsI GAAGACnn'nnnn_ Cuts at: 704 3018 3901 704 Size: 2314 883 3708 Fragments arranged by size: 3708 2314 883 BbvCI CC'TCA_GC Cuts at: 269 1370 1713 2562 3818 269 Size: 1101 343 849 1256 3356 Fragments arranged by size: 3356 1256 1101 849 343 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 3531 3565 3531 Size: 34 6871 BciVI GTATCCnnnnn_n' Cuts at: 4803 5859 6905 4803 Size: 1056 1046 4803 Fragments arranged by size: 4803 1056 1046 BclI T'GATC_A Cuts at: 4425 4425 Size: 6905 BglI GCCn_nnn'nGGC Cuts at: 2150 3580 2150 Size: 1430 5475 BglII A'GATC_T Cuts at: 4420 6457 4420 Size: 2037 4868 BlpI GC'TnA_GC Cuts at: 603 1228 3052 3227 4017 603 Size: 625 1824 175 790 3491 Fragments arranged by size: 3491 1824 790 625 175 Bme1580I G_kGCm'C Cuts at: 468 2168 2616 4530 4623 5747 468 Size: 1700 448 1914 93 1124 1626 Fragments arranged by size: 1914 1700 1626 1124 448 93 BmrI ACTGGGnnnn_n' Cuts at: 815 911 3303 3351 4117 4198 4533 6677 815 Size: 96 2392 48 766 81 335 2144 1043 Fragments arranged by size: 2392 2144 1043 766 335 96 81 48 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 1857 2913 5272 1857 Size: 1056 2359 3490 Fragments arranged by size: 3490 2359 1056 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 379 457 541 574 1080 1321 1852 2656 3111 Size: 78 84 33 506 241 531 804 455 Cuts at: 3111 3520 379 Size: 409 3764 Fragments arranged by size: 3764 804 531 506 455 409 241 84 78 33 Bpu10I CC'TnA_GC Cuts at: 269 427 1370 1390 1713 2105 2562 3818 269 Size: 158 943 20 323 392 457 1256 3356 Fragments arranged by size: 3356 1256 943 457 392 323 158 20 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2698 4081 4960 5674 5972 2698 Size: 1383 879 714 298 3631 Fragments arranged by size: 3631 1383 879 714 298 BsaI GGTCTCn'nnnn_ Cuts at: 413 1430 6609 413 Size: 1017 5179 709 Fragments arranged by size: 5179 1017 709 BsaAI yAC'GTr Cuts at: 4258 4258 Size: 6905 BsaBI GATnn'nnATC Cuts at: 6 4419 6456 6 Size: 4413 2037 455 Fragments arranged by size: 4413 2037 455 BsaHI Gr'CG_yC Cuts at: 792 1039 1873 2576 2741 3484 4336 4584 5286 Size: 247 834 703 165 743 852 248 702 Cuts at: 5286 6782 792 Size: 1496 915 Fragments arranged by size: 1496 915 852 834 743 703 702 248 247 165 BsaWI w'CCGG_w Cuts at: 1759 3071 3347 4094 4615 5293 5704 5851 6125 Size: 1312 276 747 521 678 411 147 274 Cuts at: 6125 1759 Size: 2539 Fragments arranged by size: 2539 1312 747 678 521 411 276 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1408 1438 1508 1538 3433 3463 1408 Size: 30 70 30 1895 30 4850 Fragments arranged by size: 4850 1895 70 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 454 916 959 1772 1903 2031 2244 2515 2534 Size: 462 43 813 131 128 213 271 19 Cuts at: 2534 2668 2872 3301 3835 454 Size: 134 204 429 534 3524 Fragments arranged by size: 3524 813 534 462 429 271 213 204 134 131 128 43 19 BseYI C'CCAG_C Cuts at: 849 1472 2335 2533 4330 5088 5753 6161 849 Size: 623 863 198 1797 758 665 408 1593 Fragments arranged by size: 1797 1593 863 758 665 623 408 198 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 595 1984 3525 595 Size: 1389 1541 3975 Fragments arranged by size: 3975 1541 1389 BsiEI CG_ry'CG Cuts at: 104 4447 4493 5723 104 Size: 4343 46 1230 1286 Fragments arranged by size: 4343 1286 1230 46 BsiHKAI G_wGCw'C Cuts at: 860 926 1282 1645 1889 2299 2864 2975 3071 Size: 66 356 363 244 410 565 111 96 Cuts at: 3071 3233 3323 3919 4697 4887 5747 860 Size: 162 90 596 778 190 860 2018 Fragments arranged by size: 2018 860 778 596 565 410 363 356 244 190 162 111 96 90 66 BsmI GAATG_Cn' Cuts at: 980 2821 980 Size: 1841 5064 BsmBI CGTCTCn'nnnn_ Cuts at: 803 2130 2591 803 Size: 1327 461 5117 Fragments arranged by size: 5117 1327 461 Bsp1286I G_dGCh'C Cuts at: 468 811 860 926 1282 1645 1889 2168 2299 Size: 343 49 66 356 363 244 279 131 Cuts at: 2299 2616 2864 2975 3071 3233 3298 3323 3919 Size: 317 248 111 96 162 65 25 596 Cuts at: 3919 4530 4623 4697 4887 4949 5747 468 Size: 611 93 74 190 62 798 1626 Fragments arranged by size: 1626 798 611 596 363 356 343 317 279 248 244 190 162 131 111 96 93 74 66 65 62 49 25 BspEI T'CCGG_A Cuts at: 3071 3071 Size: 6905 BspHI T'CATG_A Cuts at: 3416 5337 3416 Size: 1921 4984 BspMI ACCTGCnnnn'nnnn_ Cuts at: 1527 1643 2286 3955 4169 4471 4852 1527 Size: 116 643 1669 214 302 381 3580 Fragments arranged by size: 3580 1669 643 381 302 214 116 BsrBI CCG'CTC Cuts at: 50 113 1596 2104 5197 5251 6735 6900 50 Size: 63 1483 508 3093 54 1484 165 55 Fragments arranged by size: 3093 1484 1483 508 165 63 55 54 BsrDI GCAATG_nn' Cuts at: 1012 3048 4817 1012 Size: 2036 1769 3100 Fragments arranged by size: 3100 2036 1769 BsrFI r'CCGG_y Cuts at: 1759 2144 2323 2529 4903 5084 1759 Size: 385 179 206 2374 181 3580 Fragments arranged by size: 3580 2374 385 206 181 179 BssSI C'ACGA_G Cuts at: 5176 5884 5176 Size: 708 6197 BstAPI GCAn_nnn'nTGC Cuts at: 3737 4282 3737 Size: 545 6360 BstBI TT'CG_AA Cuts at: 5266 5266 Size: 6905 BstEII G'GTnAC_C Cuts at: 1762 1762 Size: 6905 BstXI CCAn_nnnn'nTGG Cuts at: 396 1180 2343 396 Size: 784 1163 4958 Fragments arranged by size: 4958 1163 784 BstYI r'GATC_y Cuts at: 1 354 884 2556 2752 2999 3930 4397 4420 Size: 353 530 1672 196 247 931 467 23 Cuts at: 4420 4755 5001 5307 5319 5405 6457 1 Size: 335 246 306 12 86 1052 449 Fragments arranged by size: 1672 1052 931 530 467 449 353 335 306 247 246 196 86 23 12 BstZ17I GTA'TAC Cuts at: 1926 1926 Size: 6905 Bsu36I CC'TnA_GG Cuts at: 3254 3254 Size: 6905 BtgI C'CryG_G Cuts at: 938 2318 2342 2745 938 Size: 1380 24 403 5098 Fragments arranged by size: 5098 1380 403 24 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4855 5036 5199 4855 Size: 181 163 6561 Fragments arranged by size: 6561 181 163 BtsI GCAGTG_nn' Cuts at: 1282 2103 2610 4148 1282 Size: 821 507 1538 4039 Fragments arranged by size: 4039 1538 821 507 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 995 1030 995 Size: 35 6870 DraI TTT'AAA Cuts at: 3904 3904 Size: 6905 DrdI GACnn_nn'nnGTC Cuts at: 906 4611 5955 906 Size: 3705 1344 1856 Fragments arranged by size: 3705 1856 1344 EaeI y'GGCC_r Cuts at: 1464 2321 2487 3458 3530 4490 4664 5055 5082 Size: 857 166 971 72 960 174 391 27 Cuts at: 5082 6427 1464 Size: 1345 1942 Fragments arranged by size: 1942 1345 971 960 857 391 174 166 72 27 EagI C'GGCC_G Cuts at: 4490 4490 Size: 6905 EarI CTCTTCn'nnn_ Cuts at: 195 618 941 2262 2990 3238 3286 3884 4928 Size: 423 323 1321 728 248 48 598 1044 Cuts at: 4928 5138 195 Size: 210 1962 Fragments arranged by size: 1962 1321 1044 728 598 423 323 248 210 48 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 1579 2222 2234 3019 5113 5855 6001 6715 1579 Size: 643 12 785 2094 742 146 714 1769 Fragments arranged by size: 2094 1769 785 742 714 643 146 12 EcoICRI GAG'CTC Cuts at: 858 924 2297 2862 2973 3231 3917 858 Size: 66 1373 565 111 258 686 3846 Fragments arranged by size: 3846 1373 686 565 258 111 66 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 379 457 541 574 1080 1321 1852 1917 1929 Size: 78 84 33 506 241 531 65 12 Cuts at: 1929 2656 3025 3111 3503 3520 3786 4730 5162 Size: 727 369 86 392 17 266 944 432 Cuts at: 5162 5515 6177 379 Size: 353 662 1107 Fragments arranged by size: 1107 944 727 662 531 506 432 392 369 353 266 241 86 84 78 65 33 17 12 EcoNI CCTnn'n_nnAGG Cuts at: 1918 3088 3592 3817 1918 Size: 1170 504 225 5006 Fragments arranged by size: 5006 1170 504 225 EcoO109I rG'GnC_Cy Cuts at: 1632 2109 2189 2612 2613 2840 3170 3525 3639 Size: 477 80 423 1 227 330 355 114 Cuts at: 3639 3825 4044 1632 Size: 186 219 4493 Fragments arranged by size: 4493 477 423 355 330 227 219 186 114 80 1 EcoRI G'AATT_C Cuts at: 590 1330 3909 590 Size: 740 2579 3586 Fragments arranged by size: 3586 2579 740 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4924 4924 Size: 6905 FspI TGC'GCA Cuts at: 4686 4686 Size: 6905 HaeII r_GCGC'y Cuts at: 1042 3487 4339 4587 5817 6588 1042 Size: 2445 852 248 1230 771 1359 Fragments arranged by size: 2445 1359 1230 852 771 248 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1234 1266 1408 1440 1606 1638 2656 2688 3544 Size: 32 142 32 166 32 1018 32 856 Cuts at: 3544 3576 4747 4777 4779 4809 1234 Size: 32 1171 30 2 30 3330 Fragments arranged by size: 3330 1171 1018 856 166 142 32 32 32 32 32 30 30 2 HincII GTy'rAC Cuts at: 917 1137 1757 2990 3944 917 Size: 220 620 1233 954 3878 Fragments arranged by size: 3878 1233 954 620 220 HindIII A'AGCT_T Cuts at: 2222 2222 Size: 6905 KasI G'GCGC_C Cuts at: 1038 3483 4335 4583 1038 Size: 2445 852 248 3360 Fragments arranged by size: 3360 2445 852 248 KpnI G_GTAC'C Cuts at: 3925 3925 Size: 6905 MfeI C'AATT_G Cuts at: 503 503 Size: 6905 MluI A'CGCG_T Cuts at: 6338 6338 Size: 6905 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 826 1089 2630 5664 5848 826 Size: 263 1541 3034 184 1883 Fragments arranged by size: 3034 1883 1541 263 184 MscI TGG'CCA Cuts at: 2489 3460 4666 2489 Size: 971 1206 4728 Fragments arranged by size: 4728 1206 971 MslI CAynn'nnrTG Cuts at: 985 1178 3191 3358 4894 5021 985 Size: 193 2013 167 1536 127 2869 Fragments arranged by size: 2869 2013 1536 193 167 127 MspA1I CmG'CkG Cuts at: 268 1248 1452 2004 2010 2566 2573 2747 4016 Size: 980 204 552 6 556 7 174 1269 Cuts at: 4016 4330 4690 5474 5719 268 Size: 314 360 784 245 1454 Fragments arranged by size: 1454 1269 980 784 556 552 360 314 245 204 174 7 6 NaeI GCC'GGC Cuts at: 2146 5086 2146 Size: 2940 3965 NarI GG'CG_CC Cuts at: 1039 3484 4336 4584 1039 Size: 2445 852 248 3360 Fragments arranged by size: 3360 2445 852 248 NcoI C'CATG_G Cuts at: 2318 2318 Size: 6905 NdeI CA'TA_TG Cuts at: 1179 1179 Size: 6905 NgoMIV G'CCGG_C Cuts at: 2144 5084 2144 Size: 2940 3965 NspI r_CATG'y Cuts at: 1812 1824 3336 3735 3765 3958 4458 6061 1812 Size: 12 1512 399 30 193 500 1603 2656 Fragments arranged by size: 2656 1603 1512 500 399 193 30 12 PasI CC'CwG_GG Cuts at: 1495 2581 1495 Size: 1086 5819 PciI A'CATG_T Cuts at: 3332 6057 3332 Size: 2725 4180 PflMI CCAn_nnn'nTGG Cuts at: 1435 2533 3138 3704 1435 Size: 1098 605 566 4636 Fragments arranged by size: 4636 1098 605 566 PfoI T'CCnGG_A Cuts at: 1282 3083 1282 Size: 1801 5104 PmeI GTTT'AAAC Cuts at: 3904 3904 Size: 6905 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3380 3412 5351 5383 3380 Size: 32 1939 32 4902 Fragments arranged by size: 4902 1939 32 32 PpuMI rG'GwC_Cy Cuts at: 1632 2189 2840 3170 3639 1632 Size: 557 651 330 469 4898 Fragments arranged by size: 4898 651 557 469 330 PshAI GACnn'nnGTC Cuts at: 795 795 Size: 6905 PsiI TTA'TAA Cuts at: 3784 3784 Size: 6905 PspOMI G'GGCC_C Cuts at: 2612 2612 Size: 6905 PspXI vC'TCGA_Gb Cuts at: 2427 2427 Size: 6905 PstI C_TGCA'G Cuts at: 1213 1582 1640 2015 2879 3638 3952 4637 1213 Size: 369 58 375 864 759 314 685 3481 Fragments arranged by size: 3481 864 759 685 375 369 314 58 PvuI CG_AT'CG Cuts at: 104 104 Size: 6905 PvuII CAG'CTG Cuts at: 268 1248 1452 2010 4330 4690 268 Size: 980 204 558 2320 360 2483 Fragments arranged by size: 2483 2320 980 558 360 204 RsrII CG'GwC_CG Cuts at: 5100 5100 Size: 6905 SacI G_AGCT'C Cuts at: 860 926 2299 2864 2975 3233 3919 860 Size: 66 1373 565 111 258 686 3846 Fragments arranged by size: 3846 1373 686 565 258 111 66 SacII CC_GC'GG Cuts at: 2748 2748 Size: 6905 SalI G'TCGA_C Cuts at: 3942 3942 Size: 6905 SapI GCTCTTCn'nnn_ Cuts at: 3238 3286 4928 5138 3238 Size: 48 1642 210 5005 Fragments arranged by size: 5005 1642 210 48 SbfI CC_TGCA'GG Cuts at: 3638 3952 3638 Size: 314 6591 ScaI AGT'ACT Cuts at: 3538 6422 3538 Size: 2884 4021 SfcI C'TryA_G Cuts at: 33 621 1209 1578 1636 2011 2835 2875 3634 Size: 588 588 369 58 375 824 40 759 Cuts at: 3634 3948 4633 5601 5792 33 Size: 314 685 968 191 1146 Fragments arranged by size: 1146 968 824 759 685 588 588 375 369 314 191 58 40 SfoI GGC'GCC Cuts at: 1040 3485 4337 4585 1040 Size: 2445 852 248 3360 Fragments arranged by size: 3360 2445 852 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6905 SmaI CCC'GGG Cuts at: 3148 3927 3148 Size: 779 6126 SmlI C'TyrA_G Cuts at: 2427 2516 2713 4060 4975 5689 5951 2427 Size: 89 197 1347 915 714 262 3381 Fragments arranged by size: 3381 1347 915 714 262 197 89 SpeI A'CTAG_T Cuts at: 67 67 Size: 6905 SphI G_CATG'C Cuts at: 3735 3958 4458 3735 Size: 223 500 6182 Fragments arranged by size: 6182 500 223 StuI AGG'CCT Cuts at: 2017 2017 Size: 6905 StyI C'CwwG_G Cuts at: 350 2318 4039 4393 350 Size: 1968 1721 354 2862 Fragments arranged by size: 2862 1968 1721 354 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 243 1035 1723 4488 4621 5080 5289 243 Size: 792 688 2765 133 459 209 1859 Fragments arranged by size: 2765 1859 792 688 459 209 133 TatI w'GTAC_w Cuts at: 2810 2879 3536 6420 2810 Size: 69 657 2884 3295 Fragments arranged by size: 3295 2884 657 69 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 1508 1540 2209 2241 3592 3624 6422 6454 1508 Size: 32 669 32 1351 32 2798 32 1959 Fragments arranged by size: 2798 1959 1351 669 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 4702 4702 Size: 6905 XbaI T'CTAG_A Cuts at: 3936 3936 Size: 6905 XcmI CCAnnnn_n'nnnnTGG Cuts at: 207 393 549 567 1180 1456 3135 3495 4400 Size: 186 156 18 613 276 1679 360 905 Cuts at: 4400 207 Size: 2712 Fragments arranged by size: 2712 1679 905 613 360 276 186 156 18 XhoI C'TCGA_G Cuts at: 2427 2516 2427 Size: 89 6816 XmaI C'CCGG_G Cuts at: 3146 3925 3146 Size: 779 6126 XmnI GAAnn'nnTTC Cuts at: 2941 3442 2941 Size: 501 6404 ZraI GAC'GTC Cuts at: 793 2742 793 Size: 1949 4956 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflIII AgeI AhdI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BssSI BstAPI BstBI BstEII BstXI BstYI BstZ17I Bsu36I BtgI BtgZI BtsI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PspXI PstI PvuI PvuII RsrII SacI SacII SalI SapI SbfI ScaI SfcI SfoI SgfI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AflII AleI AlfI AscI AvrII BaeI BfrBI BmgBI BmtI BsiWI BsrGI BssHII ClaI DraIII EcoRV FseI FspAI HpaI NheI NotI NruI NsiI PacI PmlI PsrI SanDI SexAI SfiI SgrAI SnaBI SrfI SspI SwaI