Result of FASTA (ccds) for
pF1KB9348
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9348, 273 aa
1>>>pF1KB9348 273 - 273 aa - 273 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1590+/-0.000721; mu= 7.3544+/- 0.044
mean_var=110.4149+/-21.519, 0's: 0 Z-trim(113.1): 31 B-trim: 2 in 1/52
Lambda= 0.122056
statistics sampled from 13751 (13778) to 13751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.423), width: 16
Scan time: 2.590
The best scores are: opt bits E(32554)
CCDS46716.1 TEF gene_id:7008|Hs108|chr22 ( 273) 1784 324.0 6.9e-89
CCDS14014.1 TEF gene_id:7008|Hs108|chr22 ( 303) 1668 303.6 1.1e-82
CCDS11585.1 HLF gene_id:3131|Hs108|chr17 ( 295) 1002 186.3 2.1e-47
CCDS82164.1 HLF gene_id:3131|Hs108|chr17 ( 210) 815 153.4 1.3e-37
CCDS12728.1 DBP gene_id:1628|Hs108|chr19 ( 325) 753 142.5 3.6e-34
>>CCDS46716.1 TEF gene_id:7008|Hs108|chr22 (273 aa)
initn: 1784 init1: 1784 opt: 1784 Z-score: 1709.3 bits: 324.0 E(32554): 6.9e-89
Smith-Waterman score: 1784; 100.0% identity (100.0% similar) in 273 aa overlap (1-273:1-273)
10 20 30 40 50 60
pF1KB9 MDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB9 GESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKESASSSTASPPSSSTAIFQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB9 PSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PSETVSSTESSLEKERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB9 EDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEK
190 200 210 220 230 240
250 260 270
pF1KB9 ENTALRTEVAELRKEVGKCKTIVSKYETKYGPL
:::::::::::::::::::::::::::::::::
CCDS46 ENTALRTEVAELRKEVGKCKTIVSKYETKYGPL
250 260 270
>>CCDS14014.1 TEF gene_id:7008|Hs108|chr22 (303 aa)
initn: 1641 init1: 1641 opt: 1668 Z-score: 1598.2 bits: 303.6 E(32554): 1.1e-82
Smith-Waterman score: 1668; 96.3% identity (97.4% similar) in 270 aa overlap (4-273:36-303)
10 20 30
pF1KB9 MDMPEVLKSLLEHSLPWPEKRTDKEKGKEKLEE
: :::.:.:. : : : :::::::::::
CCDS14 GGKKPPVDPQAGPGPGPGRAAGERGLSGSFPLVLKKLMEN--PPREARLDKEKGKEKLEE
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLL
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB9 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PVAELEGKESASSSTASPPSSSTAIFQPSETVSSTESSLEKERETPSPIDPNCVEVDVNF
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB9 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKN
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB9 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL
250 260 270 280 290 300
>>CCDS11585.1 HLF gene_id:3131|Hs108|chr17 (295 aa)
initn: 978 init1: 732 opt: 1002 Z-score: 964.5 bits: 186.3 E(32554): 2.1e-47
Smith-Waterman score: 1002; 56.8% identity (79.1% similar) in 278 aa overlap (6-273:21-295)
10 20 30 40
pF1KB9 MDMPEVLKSLLEHSLPWPEKRTD---KEKGKEKLEEDEAAAASTM
::.::::. : : .. : :.: ::: .::. . :.
CCDS11 MEKMSRPLPLNPTFIPPPYGVLRSLLENPLKLPLHHEDAFSKDKDKEKKLDDESNSP-TV
10 20 30 40 50
50 60 70 80 90 100
pF1KB9 AVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAELEGKE
:: : : .::::.::::..:.::::::.::: ::::: ::.. :. : :.
CCDS11 PQSAFLGPTLWDKTLPYDGDTFQLEYMDLEEFLSENGIPPSPSQHDHSPHPP--GLQPAS
60 70 80 90 100 110
110 120 130 140 150
pF1KB9 SASSSTASPPSSSTAIFQPSETVSSTESS-------LEKERETPSPIDPNCVEVDVNFNP
::. :. . : ..: ..:. . .: : .:.:::::::. ..: :...:
CCDS11 SAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPVGYEP
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB9 DPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRKKNNV
:::::.:::.:: :.:.:::.::.::.::::::::::.:::.::. ::.:::.::.:::.
CCDS11 DPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRRKNNM
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB9 AAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYGPL
::::::::::::::::.:::.::::::.::: :::.::::.::::.:..:::...:::
CCDS11 AAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHGPL
240 250 260 270 280 290
>>CCDS82164.1 HLF gene_id:3131|Hs108|chr17 (210 aa)
initn: 809 init1: 732 opt: 815 Z-score: 788.9 bits: 153.4 E(32554): 1.3e-37
Smith-Waterman score: 815; 59.0% identity (81.6% similar) in 212 aa overlap (69-273:1-210)
40 50 60 70 80 90
pF1KB9 ASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLENGIPASPTHLAHNLLLPVAEL
:::.::: ::::: ::.. :. : :
CCDS82 MDLEEFLSENGIPPSPSQHDHSPHPP--GL
10 20
100 110 120 130 140 150
pF1KB9 EGKESASSSTASPPSSSTAIFQPSETVSSTESS-------LEKERETPSPIDPNCVEVDV
. ::. :. . : ..: ..:. . .: : .:.:::::::. ..: :
CCDS82 QPASSAAPSVMDLSSRASAPLHPGIPSPNCMQSPIRPGQLLPANRNTPSPIDPDTIQVPV
30 40 50 60 70 80
160 170 180 190 200 210
pF1KB9 NFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKKAKKVFVPDEQKDEKYWTRRK
...::::::.:::.:: :.:.:::.::.::.::::::::::.:::.::. ::.:::.::.
CCDS82 GYEPDPADLALSSIPGQEMFDPRKRKFSEEELKPQPMIKKARKVFIPDDLKDDKYWARRR
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB9 KNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAELRKEVGKCKTIVSKYETKYG
:::.::::::::::::::::.:::.::::::.::: :::.::::.::::.:..:::...:
CCDS82 KNNMAAKRSRDARRLKENQIAIRASFLEKENSALRQEVADLRKELGKCKNILAKYEARHG
150 160 170 180 190 200
pF1KB9 PL
::
CCDS82 PL
210
>>CCDS12728.1 DBP gene_id:1628|Hs108|chr19 (325 aa)
initn: 738 init1: 638 opt: 753 Z-score: 726.9 bits: 142.5 E(32554): 3.6e-34
Smith-Waterman score: 753; 51.3% identity (76.3% similar) in 232 aa overlap (48-273:100-325)
20 30 40 50 60 70
pF1KB9 PEKRTDKEKGKEKLEEDEAAAASTMAVSASLMPPIWDKTIPYDGESFHLEYMDLDEFLLE
: : .:..:.:. :. .::.::: ::::
CCDS12 TAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLLWERTLPF-GD---VEYVDLDAFLLE
70 80 90 100 110 120
80 90 100 110 120 130
pF1KB9 NGIPASPTHLAHNLLLPVAELEGKES---ASSSTASPPSSSTAIFQPSETVSSTESSLEK
.:.: :: . : : .: ..::: :: :.... .: :. .
CCDS12 HGLPPSPPPPGGPSPEPSPARTPAPSPGPGSCGSASPRSSPG--HAPARAALGTASGHRA
130 140 150 160 170 180
140 150 160 170 180 190
pF1KB9 ---ERETPSPIDPNCVEVDVNFNPDPADLVLSSVPGGELFNPRKHKFAEEDLKPQPMIKK
:.::::.::. ::: ..:.::::::.:::.:: : :.::.:.:.::.:::::..::
CCDS12 GLTSRDTPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKK
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB9 AKKVFVPDEQKDEKYWTRRKKNNVAAKRSRDARRLKENQITIRAAFLEKENTALRTEVAE
:.:. ::.::::::::.:: ::: ::::::::::::::::..:::::::::. :: ::.
CCDS12 ARKIQVPEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVA
250 260 270 280 290 300
260 270
pF1KB9 LRKEVGKCKTIVSKYETKYGPL
.:.:... ....:.:....: :
CCDS12 VRQELSHYRAVLSRYQAQHGAL
310 320
273 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 18:22:13 2016 done: Thu Nov 3 18:22:14 2016
Total Scan time: 2.590 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]