FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9397, 650 aa
  1>>>pF1KB9397 650 - 650 aa - 650 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7131+/-0.00101; mu= 8.8535+/- 0.061
 mean_var=156.0560+/-30.735, 0's: 0 Z-trim(109.6): 35  B-trim: 0 in 0/50
 Lambda= 0.102668
 statistics sampled from 11009 (11035) to 11009 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.339), width:  16
 Scan time:  3.950

The best scores are:                                      opt bits E(32554)
CCDS554.1 FAF1 gene_id:11124|Hs108|chr1            ( 650) 4274 645.4  7e-185


>>CCDS554.1 FAF1 gene_id:11124|Hs108|chr1                 (650 aa)
 initn: 4274 init1: 4274 opt: 4274  Z-score: 3432.7  bits: 645.4 E(32554): 7e-185
Smith-Waterman score: 4274; 100.0% identity (100.0% similar) in 650 aa overlap (1-650:1-650)

               10        20        30        40        50        60
pF1KB9 MASNMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIPQENGILQSEYGGET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MASNMDREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIPQENGILQSEYGGET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 IPGPAFNPASHPASAPTSSSSSAFRPVMPSRQIVERQPRMLDFRVEYRDRNVDVVLEDTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IPGPAFNPASHPASAPTSSSSSAFRPVMPSRQIVERQPRMLDFRVEYRDRNVDVVLEDTC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 TVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPDLPPPSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLPKNNSLYVLTPDLPPPSSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SHAGALQESLNQNFMLIITHREVQREYNLNFSGSSTIQEVKRNVYDLTSIPVRHQLWEGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SHAGALQESLNQNFMLIITHREVQREYNLNFSGSSTIQEVKRNVYDLTSIPVRHQLWEGW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 PTSATDDSMCLAESGLSYPCHRLTVGRRSSPAQTREQSEEQITDVHMVSDSDGDDFEDAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PTSATDDSMCLAESGLSYPCHRLTVGRRSSPAQTREQSEEQITDVHMVSDSDGDDFEDAT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 EFGVDDGEVFGMASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EFGVDDGEVFGMASSALRKSPMMPENAENEGDALLQFTAEFSSRYGDCHPVFFIGSLEAA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 FQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 RARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RARFLTMCNRHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 MAAMEIFTAQQQEDIKDEDEREARENVKREQDEAYRLSLEADRAKREAHEREMAEQFRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAAMEIFTAQQQEDIKDEDEREARENVKREQDEAYRLSLEADRAKREAHEREMAEQFRLE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB9 QIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QIRKEQEEEREAIRLSLEQALPPEPKEENAEPVSKLRIRTPSGEFLERRFLASNKLQIVF
              550       560       570       580       590       600

              610       620       630       640       650
pF1KB9 DFVASKGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DFVASKGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAKE
              610       620       630       640       650




650 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 18:24:27 2016 done: Thu Nov  3 18:24:28 2016
 Total Scan time:  3.950 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]