FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9402, 575 aa
  1>>>pF1KB9402 575 - 575 aa - 575 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.6039+/-0.00106; mu= -22.3019+/- 0.064
 mean_var=552.2235+/-112.291, 0's: 0 Z-trim(117.2): 24  B-trim: 59 in 1/53
 Lambda= 0.054578
 statistics sampled from 17945 (17966) to 17945 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.814), E-opt: 0.2 (0.552), width:  16
 Scan time:  4.620

The best scores are:                                      opt bits E(32554)
CCDS7615.1 BAG3 gene_id:9531|Hs108|chr10           ( 575) 3959 326.2 6.8e-89


>>CCDS7615.1 BAG3 gene_id:9531|Hs108|chr10                (575 aa)
 initn: 3959 init1: 3959 opt: 3959  Z-score: 1709.4  bits: 326.2 E(32554): 6.8e-89
Smith-Waterman score: 3959; 100.0% identity (100.0% similar) in 575 aa overlap (1-575:1-575)

               10        20        30        40        50        60
pF1KB9 MSAATHSPMMQVASGNGDRDPLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRVPSEGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MSAATHSPMMQVASGNGDRDPLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRVPSEGPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ETPSSANGPSREGSRLPPAREGHPVYPQLRPGYIPIPVLHEGAENRQVHPFHVYPQPGMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ETPSSANGPSREGSRLPPAREGHPVYPQLRPGYIPIPVLHEGAENRQVHPFHVYPQPGMQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RFRTEAAAAAPQRSQSPLRGMPETTQPDKQCGQVAAAAAAQPPASHGPERSQSPAASDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RFRTEAAAAAPQRSQSPLRGMPETTQPDKQCGQVAAAAAAQPPASHGPERSQSPAASDCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SSSSSASLPSSGRSSLGSHQLPRGYISIPVIHEQNVTRPAAQPSFHQAQKTHYPAQQGEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SSSSSASLPSSGRSSLGSHQLPRGYISIPVIHEQNVTRPAAQPSFHQAQKTHYPAQQGEY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QTHQPVYHKIQGDDWEPRPLRAASPFRSSVQGASSREGSPARSSTPLHSPSPIRVHTVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QTHQPVYHKIQGDDWEPRPLRAASPFRSSVQGASSREGSPARSSTPLHSPSPIRVHTVVD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RPQQPMTHRETAPVSQPENKPESKPGPVGPELPPGHIPIQVIRKEVDSKPVSQKPPPPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RPQQPMTHRETAPVSQPENKPESKPGPVGPELPPGHIPIQVIRKEVDSKPVSQKPPPPSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 KVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTAPAEATPPKPGEAEAPPKHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTAPAEATPPKPGEAEAPPKHP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 GVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 RDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEADQPLQAIMEMGAVAADKGKKNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEADQPLQAIMEMGAVAADKGKKNAG
              490       500       510       520       530       540

              550       560       570     
pF1KB9 NAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP
       :::::::::::::::::::::::::::::::::::
CCDS76 NAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP
              550       560       570     




575 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:17:18 2016 done: Wed Nov  2 23:17:18 2016
 Total Scan time:  4.620 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]