FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9402, 575 aa
  1>>>pF1KB9402 575 - 575 aa - 575 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 16.1946+/-0.000443; mu= -31.8416+/- 0.028
 mean_var=678.9404+/-139.153, 0's: 0 Z-trim(125.4): 8  B-trim: 0 in 0/61
 Lambda= 0.049222
 statistics sampled from 48900 (48948) to 48900 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.574), width:  16
 Scan time: 14.030

The best scores are:                                      opt bits E(85289)
NP_004272 (OMIM: 603883,612954,613881) BAG family  ( 575) 3959 296.1 2.1e-79
XP_005270344 (OMIM: 603883,612954,613881) PREDICTE ( 574) 3940 294.7 5.4e-79


>>NP_004272 (OMIM: 603883,612954,613881) BAG family mole  (575 aa)
 initn: 3959 init1: 3959 opt: 3959  Z-score: 1546.4  bits: 296.1 E(85289): 2.1e-79
Smith-Waterman score: 3959; 100.0% identity (100.0% similar) in 575 aa overlap (1-575:1-575)

               10        20        30        40        50        60
pF1KB9 MSAATHSPMMQVASGNGDRDPLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRVPSEGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSAATHSPMMQVASGNGDRDPLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRVPSEGPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ETPSSANGPSREGSRLPPAREGHPVYPQLRPGYIPIPVLHEGAENRQVHPFHVYPQPGMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ETPSSANGPSREGSRLPPAREGHPVYPQLRPGYIPIPVLHEGAENRQVHPFHVYPQPGMQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RFRTEAAAAAPQRSQSPLRGMPETTQPDKQCGQVAAAAAAQPPASHGPERSQSPAASDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RFRTEAAAAAPQRSQSPLRGMPETTQPDKQCGQVAAAAAAQPPASHGPERSQSPAASDCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SSSSSASLPSSGRSSLGSHQLPRGYISIPVIHEQNVTRPAAQPSFHQAQKTHYPAQQGEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SSSSSASLPSSGRSSLGSHQLPRGYISIPVIHEQNVTRPAAQPSFHQAQKTHYPAQQGEY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QTHQPVYHKIQGDDWEPRPLRAASPFRSSVQGASSREGSPARSSTPLHSPSPIRVHTVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QTHQPVYHKIQGDDWEPRPLRAASPFRSSVQGASSREGSPARSSTPLHSPSPIRVHTVVD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RPQQPMTHRETAPVSQPENKPESKPGPVGPELPPGHIPIQVIRKEVDSKPVSQKPPPPSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RPQQPMTHRETAPVSQPENKPESKPGPVGPELPPGHIPIQVIRKEVDSKPVSQKPPPPSE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 KVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTAPAEATPPKPGEAEAPPKHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTAPAEATPPKPGEAEAPPKHP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 GVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQAR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB9 RDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEADQPLQAIMEMGAVAADKGKKNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEADQPLQAIMEMGAVAADKGKKNAG
              490       500       510       520       530       540

              550       560       570     
pF1KB9 NAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP
       :::::::::::::::::::::::::::::::::::
NP_004 NAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP
              550       560       570     

>>XP_005270344 (OMIM: 603883,612954,613881) PREDICTED: B  (574 aa)
 initn: 2237 init1: 2135 opt: 3940  Z-score: 1539.2  bits: 294.7 E(85289): 5.4e-79
Smith-Waterman score: 3940; 99.8% identity (99.8% similar) in 575 aa overlap (1-575:1-574)

               10        20        30        40        50        60
pF1KB9 MSAATHSPMMQVASGNGDRDPLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRVPSEGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSAATHSPMMQVASGNGDRDPLPPGWEIKIDPQTGWPFFVDHNSRTTTWNDPRVPSEGPK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 ETPSSANGPSREGSRLPPAREGHPVYPQLRPGYIPIPVLHEGAENRQVHPFHVYPQPGMQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ETPSSANGPSREGSRLPPAREGHPVYPQLRPGYIPIPVLHEGAENRQVHPFHVYPQPGMQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 RFRTEAAAAAPQRSQSPLRGMPETTQPDKQCGQVAAAAAAQPPASHGPERSQSPAASDCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RFRTEAAAAAPQRSQSPLRGMPETTQPDKQCGQVAAAAAAQPPASHGPERSQSPAASDCS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SSSSSASLPSSGRSSLGSHQLPRGYISIPVIHEQNVTRPAAQPSFHQAQKTHYPAQQGEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SSSSSASLPSSGRSSLGSHQLPRGYISIPVIHEQNVTRPAAQPSFHQAQKTHYPAQQGEY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 QTHQPVYHKIQGDDWEPRPLRAASPFRSSVQGASSREGSPARSSTPLHSPSPIRVHTVVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QTHQPVYHKIQGDDWEPRPLRAASPFRSSVQGASSREGSPARSSTPLHSPSPIRVHTVVD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 RPQQPMTHRETAPVSQPENKPESKPGPVGPELPPGHIPIQVIRKEVDSKPVSQKPPPPSE
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RPQ-PMTHRETAPVSQPENKPESKPGPVGPELPPGHIPIQVIRKEVDSKPVSQKPPPPSE
               310       320       330       340       350         

              370       380       390       400       410       420
pF1KB9 KVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTAPAEATPPKPGEAEAPPKHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KVEVKVPPAPVPCPPPSPGPSAVPSSPKSVATEERAAPSTAPAEATPPKPGEAEAPPKHP
     360       370       380       390       400       410         

              430       440       450       460       470       480
pF1KB9 GVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVRQAR
     420       430       440       450       460       470         

              490       500       510       520       530       540
pF1KB9 RDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEADQPLQAIMEMGAVAADKGKKNAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEADQPLQAIMEMGAVAADKGKKNAG
     480       490       500       510       520       530         

              550       560       570     
pF1KB9 NAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP
       :::::::::::::::::::::::::::::::::::
XP_005 NAEDPHTETQQPEATAAATSNPSSMTDTPGNPAAP
     540       550       560       570    




575 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 23:17:18 2016 done: Wed Nov  2 23:17:20 2016
 Total Scan time: 14.030 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]